U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



PisVer_v2

Organism name:
Pistacia vera (pistachio)
Infraspecific name:
Cultivar: Batoury
BioSample:
SAMN11269074
BioProject:
PRJNA526975
Submitter:
Chinese Academy of Sciences
Date:
2019/09/23
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_008641045.1 (latest)
RefSeq assembly accession:
GCF_008641045.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: 24 unlocalized scaffolds on chromosome MT
  • Only in RefSeq: chromosome Pltd
  • Data displayed for RefSeq version
WGS Project:
VTWI01
Assembly method:
PBJelly v. 15.8.24
Expected final version:
yes
Genome coverage:
374x
Sequencing technology:
PacBio Sequel

IDs: 4692631 [UID] 14012448 [GenBank] 14614478 [RefSeq]

See Genome Information for Pistacia vera

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length671,280,010
Total ungapped length670,220,774
Gaps between scaffolds0
Number of scaffolds1,865
Scaffold N50948,305
Scaffold L50218
Number of contigs2,327
Contig N50714,252
Contig L50282
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)1,865

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced671,119,3361,864670,060,100949,2044620
MoleculeTotal
Length
Plastid Pltd160,674