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Source database (GenBank or RefSeq) File type

UIUC_Espe_1.0

Organism name:

Etheostoma spectabile (orangethroat darter)

Isolate:

EspeVRDwgs_2016

Sex:

male

BioSample:

SAMN12373147

BioProject:

PRJNA556880

Submitter:

University of Illinois at Urbana-Champaign

Date:

2019/10/07

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_008692095.1 (latest)

RefSeq assembly accession:

GCF_008692095.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

VOFY01

Assembly method:

Meraculous2 v. 2.2.2.5; Canu v. 1.7; wtdbg2 v. 2.2; PBJelly2 v. 15.8.24; quickmerge v. DEC-2018

Expected final version:

yes

Genome coverage:

172.0x

Sequencing technology:

Illumina HiSeq; PacBio Sequel

IDs: 4791201 [UID] 14240138 [GenBank] 16548858 [RefSeq]

See Genome Information for Etheostoma spectabile

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_008692095.1	≠	GCF_008692095.1	UIUC_Espe_1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Assembly-gaps were based on both genetic linkage maps and paired-ends reads from mate-pair and shotgun libraries.

Global statistics

Total sequence length	854,806,606
Total ungapped length	850,775,429
Gaps between scaffolds	0
Number of scaffolds	3,119
Scaffold N50	30,497,795
Scaffold L50	13
Number of contigs	104,340
Contig N50	26,023
Contig L50	5,510
Total number of chromosomes and plasmids	25
Number of component sequences (WGS or clone)	3,119

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM018435.1	=	NC_045733.1	0
Chromosome 2	CM018436.1	=	NC_045734.1	0
Chromosome 3	CM018437.1	=	NC_045735.1	0
Chromosome 4	CM018438.1	=	NC_045736.1	0
Chromosome 5	CM018439.1	=	NC_045737.1	0
Chromosome 6	CM018440.1	=	NC_045738.1	0
Chromosome 7	CM018441.1	=	NC_045739.1	0
Chromosome 8	CM018442.1	=	NC_045740.1	0
Chromosome 9	CM018443.1	=	NC_045741.1	0
Chromosome 10	CM018444.1	=	NC_045742.1	0
Chromosome 11	CM018445.1	=	NC_045743.1	0
Chromosome 12	CM018446.1	=	NC_045744.1	0
Chromosome 13	CM018447.1	=	NC_045745.1	0
Chromosome 14	CM018448.1	=	NC_045746.1	0
Chromosome 15	CM018449.1	=	NC_045747.1	0
Chromosome 16	CM018450.1	=	NC_045748.1	0
Chromosome 17	CM018451.1	=	NC_045749.1	0
Chromosome 18	CM018452.1	=	NC_045750.1	0
Chromosome 19	CM018453.1	=	NC_045751.1	0
Chromosome 20	CM018454.1	=	NC_045752.1	0
Chromosome 21	CM018455.1	=	NC_045753.1	0
Chromosome 22	CM018456.1	=	NC_045754.1	0
Chromosome 23	CM018457.1	=	NC_045755.1	0
Chromosome 24	CM018458.1	=	NC_045756.1	0
unplaced	n/a	n/a	n/a	3,094

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	854,790,067	3,118	850,758,890	30,497,795	101,221
Chromosome 1	32,024,642	1	31,940,619	32,024,642	2,479
Chromosome 2	32,080,107	1	31,948,064	32,080,107	3,959
Chromosome 3	34,644,470	1	34,493,432	34,644,470	4,258
Chromosome 4	37,293,452	1	37,135,243	37,293,452	4,421
Chromosome 5	38,806,284	1	38,606,961	38,806,284	4,679
Chromosome 6	31,751,662	1	31,622,101	31,751,662	4,610
Chromosome 7	32,043,686	1	31,928,991	32,043,686	3,289
Chromosome 8	36,538,603	1	36,425,148	36,538,603	4,237
Chromosome 9	38,564,372	1	38,323,100	38,564,372	5,598
Chromosome 10	30,652,338	1	30,492,279	30,652,338	4,631
Chromosome 11	24,292,524	1	24,212,701	24,292,524	1,712
Chromosome 12	33,962,602	1	33,787,875	33,962,602	3,138
Chromosome 13	30,497,795	1	30,348,280	30,497,795	4,618
Chromosome 14	24,894,896	1	24,819,021	24,894,896	3,592
Chromosome 15	35,216,744	1	34,941,274	35,216,744	6,410
Chromosome 16	28,681,682	1	28,564,035	28,681,682	4,198
Chromosome 17	24,631,175	1	24,571,919	24,631,175	2,837
Chromosome 18	27,100,339	1	26,976,950	27,100,339	3,515
Chromosome 19	19,259,368	1	19,174,247	19,259,368	2,361
Chromosome 20	27,238,135	1	27,124,857	27,238,135	3,595
Chromosome 21	23,866,285	1	23,785,268	23,866,285	2,604
Chromosome 22	23,005,703	1	22,940,325	23,005,703	2,270
Chromosome 23	23,756,755	1	23,610,694	23,756,755	3,742
Chromosome 24	15,992,168	1	15,917,369	15,992,168	1,748
unplaced	147,994,280	3,094	147,068,137	79,482	12,720

Assembly

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UIUC_Espe_1.0

See Genome Information for Etheostoma spectabile

Pathogen Detection Resources

History (Show revision history)

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Assembly Unit Name
Primary Assembly
non-nuclear