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Panubis1.0

Organism name:
Papio anubis (olive baboon)
Isolate:
15944
Sex:
male
BioSample:
SAMN11179045
BioProject:
PRJNA527874
Submitter:
University of California, San Francisco
Date:
2019/10/02
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_008728515.1 (replaced)
RefSeq assembly accession:
GCF_008728515.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
VSMJ01
Assembly method:
Supernova v. 2018; LRScaf v. 2018; LR_Gapcloser v. 2018; 3d-dna v. 2018; Juicebox Assembly Tools v. 2018
Expected final version:
yes
Genome coverage:
60.0x

IDs: 4779671 [UID] 14216798 [GenBank] 14362028 [RefSeq]

See Genome Information for Papio anubis

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,869,821,163
Total ungapped length2,867,510,450
Gaps between scaffolds0
Number of scaffolds11,145
Scaffold N50140,274,886
Scaffold L509
Number of contigs15,213
Contig N501,464,978
Contig L50545
Total number of chromosomes and plasmids23
Number of component sequences (WGS or clone)11,145

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_008728525.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM018180.1=NC_044976.10
Chromosome 2CM018181.1=NC_044977.10
Chromosome 3CM018182.1=NC_044978.10
Chromosome 4CM018183.1=NC_044979.10
Chromosome 5CM018184.1=NC_044980.10
Chromosome 6CM018185.1=NC_044981.10
Chromosome 7CM018186.1=NC_044982.10
Chromosome 8CM018187.1=NC_044983.10
Chromosome 9CM018188.1=NC_044984.10
Chromosome 10CM018189.1=NC_044985.10
Chromosome 11CM018190.1=NC_044986.10
Chromosome 12CM018191.1=NC_044987.10
Chromosome 13CM018192.1=NC_044988.10
Chromosome 14CM018193.1=NC_044989.10
Chromosome 15CM018194.1=NC_044990.10
Chromosome 16CM018195.1=NC_044991.10
Chromosome 17CM018196.1=NC_044992.10
Chromosome 18CM018197.1=NC_044993.10
Chromosome 19CM018198.1=NC_044994.10
Chromosome 20CM018199.1=NC_044995.10
Chromosome XCM018200.1=NC_044996.10
Chromosome YCM018201.1=NC_044997.10
unplacedn/an/an/a11,122

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All2,869,804,64711,1442,867,493,934140,274,8864,0680
Chromosome 1218,172,8821218,112,551218,172,8822600
Chromosome 2193,660,7501193,627,284193,660,7501880
Chromosome 3184,919,5151184,886,406184,919,5151770
Chromosome 4182,120,9021182,045,791182,120,9022450
Chromosome 5173,900,7611173,834,443173,900,7611780
Chromosome 6167,138,2471167,113,776167,138,2471750
Chromosome 7161,768,4681161,628,747161,768,4682540
Chromosome 8140,274,8861140,251,486140,274,8861350
Chromosome 9127,591,8191127,562,076127,591,8191740
Chromosome 10126,462,6891126,442,259126,462,6891320
Chromosome 11125,913,6961125,883,779125,913,6961640
Chromosome 12123,343,4501123,317,327123,343,4501630
Chromosome 13106,849,0011106,817,220106,849,0011320
Chromosome 14106,654,9741106,641,630106,654,974980
Chromosome 1591,985,775191,955,28391,985,775910
Chromosome 1691,184,193191,139,11391,184,1931560
Chromosome 1774,525,926174,457,05774,525,9261450
Chromosome 1872,894,408172,874,20372,894,408900
Chromosome 1972,123,344172,092,79472,123,344830
Chromosome 2050,021,108149,966,22850,021,1081930
Chromosome X142,711,4961142,550,624142,711,4964270
Chromosome Y8,309,88618,288,0438,309,886480
unplaced127,276,47111,122126,005,81486,9773600
MoleculeTotal
Length
Mitochondrion MT16,516