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Source database (GenBank or RefSeq) File type

YSFRI_Pleo_2.0

Organism name:

Plectropomus leopardus (leopard coralgrouper)

Isolate:

BioSample:

SAMN11897347

BioProject:

PRJNA545594

Submitter:

Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences

Date:

2020/05/27

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_008729295.2 (latest)

RefSeq assembly accession:

GCF_008729295.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

VJNF02

Assembly method:

Supernova v. 1.2.4

Expected final version:

yes

Genome coverage:

381.0x

Sequencing technology:

PacBio

IDs: 7175041 [UID] 19716698 [GenBank] 27731398 [RefSeq]

See Genome Information for Plectropomus leopardus

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_008729295.2	≠	GCF_008729295.1	YSFRI_Pleo_2.0	Chromosome	Latest GenBank, Latest RefSeq
GCA_008729295.1	n/a	n/a	YSFRI_Pleo_1.0	Chromosome	Replaced GenBank

Comment

Global statistics

Total sequence length	895,705,288
Total ungapped length	879,896,314
Gaps between scaffolds	0
Number of scaffolds	94,260
Scaffold N50	33,285,428
Scaffold L50	13
Number of contigs	96,638
Contig N50	896,103
Contig L50	279
Total number of chromosomes and plasmids	25
Number of component sequences (WGS or clone)	94,260

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM018408.2	=	NC_056463.1	0
Chromosome 2	CM018409.2	=	NC_056464.1	0
Chromosome 3	CM018410.2	=	NC_056465.1	0
Chromosome 4	CM018411.2	=	NC_056466.1	0
Chromosome 5	CM018412.2	=	NC_056467.1	0
Chromosome 6	CM018413.2	=	NC_056468.1	0
Chromosome 7	CM018414.2	=	NC_056469.1	0
Chromosome 8	CM018415.2	=	NC_056470.1	0
Chromosome 9	CM018416.2	=	NC_056471.1	0
Chromosome 10	CM018417.2	=	NC_056472.1	0
Chromosome 11	CM018418.2	=	NC_056473.1	0
Chromosome 12	CM018419.2	=	NC_056474.1	0
Chromosome 13	CM018420.2	=	NC_056475.1	0
Chromosome 14	CM018421.2	=	NC_056476.1	0
Chromosome 15	CM018422.2	=	NC_056477.1	0
Chromosome 16	CM018423.2	=	NC_056478.1	0
Chromosome 17	CM018424.2	=	NC_056479.1	0
Chromosome 18	CM018425.2	=	NC_056480.1	0
Chromosome 19	CM018426.2	=	NC_056481.1	0
Chromosome 20	CM018427.2	=	NC_056482.1	0
Chromosome 21	CM018428.2	=	NC_056483.1	0
Chromosome 22	CM018429.2	=	NC_056484.1	0
Chromosome 23	CM018430.2	=	NC_056485.1	0
Chromosome 24	CM018431.2	=	NC_056486.1	0
unplaced	n/a	n/a	n/a	94,235

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	895,688,574	94,259	879,879,600	33,285,428	2,378
Chromosome 1	41,705,749	1	40,929,685	41,705,749	89
Chromosome 2	41,295,479	1	40,231,396	41,295,479	86
Chromosome 3	38,018,694	1	37,107,106	38,018,694	93
Chromosome 4	38,152,984	1	37,161,718	38,152,984	98
Chromosome 5	37,562,474	1	36,656,182	37,562,474	120
Chromosome 6	36,444,714	1	36,004,498	36,444,714	51
Chromosome 7	36,144,334	1	35,487,172	36,144,334	74
Chromosome 8	36,177,197	1	35,319,639	36,177,197	80
Chromosome 9	35,877,258	1	35,422,562	35,877,258	66
Chromosome 10	35,248,441	1	34,539,333	35,248,441	82
Chromosome 11	34,682,207	1	34,030,000	34,682,207	61
Chromosome 12	34,146,761	1	33,513,760	34,146,761	93
Chromosome 13	33,285,428	1	32,542,440	33,285,428	84
Chromosome 14	32,806,123	1	32,028,550	32,806,123	67
Chromosome 15	32,615,159	1	31,811,370	32,615,159	68
Chromosome 16	31,807,965	1	31,348,071	31,807,965	61
Chromosome 17	31,530,035	1	30,943,060	31,530,035	73
Chromosome 18	30,934,891	1	30,579,951	30,934,891	60
Chromosome 19	29,612,059	1	28,996,574	29,612,059	68
Chromosome 20	28,520,048	1	27,888,114	28,520,048	78
Chromosome 21	26,446,498	1	25,710,414	26,446,498	77
Chromosome 22	25,634,286	1	25,168,962	25,634,286	59
Chromosome 23	21,435,982	1	21,042,483	21,435,982	72
Chromosome 24	15,723,735	1	15,591,421	15,723,735	54
unplaced	109,880,073	94,235	109,825,139	2,394	564

Assembly

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YSFRI_Pleo_2.0

See Genome Information for Plectropomus leopardus

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear