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GENO_Phyp_1.0

Organism name:
Pangasianodon hypophthalmus (striped catfish)
Infraspecific name:
Strain: Indonesia
Sex:
male
BioSample:
SAMN11969507
BioProject:
PRJNA547555
Submitter:
GenoFish
Date:
2019/10/22
Assembly level:
Chromosome
Genome representation:
full
Excluded from RefSeq:
  • superseded by newer assembly for species
GenBank assembly accession:
GCA_009078355.1 (latest)
RefSeq assembly accession:
GCF_009078355.1 (suppressed) see latest RefSeq assembly for this species
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for GenBank version
WGS Project:
VFJC01
Assembly method:
SmartDeNovo v. MAY-2017; Juicer v. 1.5.6; 3D-DNA v. 180114
Expected final version:
yes
Genome coverage:
147.0x
Sequencing technology:
Illumina HiSeq; Oxford Nanopore GridION

IDs: 4983021 [UID] 14712038 [GenBank] 19436098 [RefSeq]

See Genome Information for Pangasianodon hypophthalmus

Pathogen Detection Resources

There are 6 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length758,990,195
Total ungapped length758,814,282
Gaps between scaffolds0
Number of scaffolds151
Scaffold N5026,458,119
Scaffold L5013
Number of contigs613
Contig N5016,187,036
Contig L5018
Total number of chromosomes and plasmids31
Number of component sequences (WGS or clone)151

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_009078435.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM018541.1=NC_047595.10
Chromosome 2CM018542.1=NC_047596.10
Chromosome 3CM018543.1=NC_047597.10
Chromosome 4CM018544.1=NC_047598.10
Chromosome 5CM018545.1=NC_047599.10
Chromosome 6CM018546.1=NC_047600.10
Chromosome 7CM018547.1=NC_047601.10
Chromosome 8CM018548.1=NC_047602.10
Chromosome 9CM018549.1=NC_047603.10
Chromosome 10CM018550.1=NC_047604.10
Chromosome 11CM018551.1=NC_047605.10
Chromosome 12CM018552.1=NC_047606.10
Chromosome 13CM018553.1=NC_047607.10
Chromosome 14CM018554.1=NC_047608.10
Chromosome 15CM018555.1=NC_047609.10
Chromosome 16CM018556.1=NC_047610.10
Chromosome 17CM018557.1=NC_047611.10
Chromosome 18CM018558.1=NC_047612.10
Chromosome 19CM018559.1=NC_047613.10
Chromosome 20CM018560.1=NC_047614.10
Chromosome 21CM018561.1=NC_047615.10
Chromosome 22CM018562.1=NC_047616.10
Chromosome 23CM018563.1=NC_047617.10
Chromosome 24CM018564.1=NC_047618.10
Chromosome 25CM018565.1=NC_047619.10
Chromosome 26CM018566.1=NC_047620.10
Chromosome 27CM018567.1=NC_047621.10
Chromosome 28CM018568.1=NC_047622.10
Chromosome 29CM018569.1=NC_047623.10
Chromosome 30CM018570.1=NC_047624.10
unplacedn/an/an/a120

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All758,973,678150758,797,76526,458,1194620
Chromosome 135,600,603135,592,29235,600,603230
Chromosome 235,203,048135,203,04835,203,04800
Chromosome 333,776,708133,773,70133,776,70870
Chromosome 433,267,568133,254,70633,267,568380
Chromosome 532,114,633132,110,94132,114,63390
Chromosome 631,307,711131,302,38231,307,711140
Chromosome 730,450,434130,445,54230,450,434100
Chromosome 830,442,583130,433,85730,442,583190
Chromosome 929,458,963129,447,07929,458,963380
Chromosome 1029,376,037129,369,94429,376,037150
Chromosome 1126,640,196126,638,56626,640,19650
Chromosome 1226,563,515126,558,15726,563,515120
Chromosome 1326,458,119126,449,56126,458,119210
Chromosome 1425,848,897125,846,04925,848,89770
Chromosome 1525,638,904125,637,74425,638,90430
Chromosome 1625,111,544125,107,86425,111,54490
Chromosome 1724,879,021124,873,68524,879,021110
Chromosome 1823,372,418123,362,18623,372,418310
Chromosome 1922,090,854122,084,31222,090,854180
Chromosome 2021,552,800121,546,33321,552,800150
Chromosome 2121,248,730121,242,65421,248,730150
Chromosome 2221,037,487121,033,82521,037,487110
Chromosome 2320,335,669120,330,86420,335,669120
Chromosome 2420,251,756120,243,69820,251,756180
Chromosome 2519,570,078119,564,77319,570,078130
Chromosome 2619,313,417119,309,55119,313,417110
Chromosome 2718,889,892118,886,70318,889,89280
Chromosome 2815,845,479115,841,38415,845,479160
Chromosome 2915,305,753115,302,34215,305,753100
Chromosome 3011,744,058111,736,30811,744,058220
unplaced6,276,8031206,267,714162,215210
MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
Mitochondrion MT16,517116,51716,51700