Nvit_psr_1.1

Organism name:: Nasonia vitripennis (jewel wasp)
Infraspecific name:: Strain: AsymCx
Sex:: male
BioSample:: SAMN12877551
BioProject:: PRJNA575073
Submitter:: Caltech
Date:: 2020/01/30
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_009193385.2 (latest)
RefSeq assembly accession:: GCF_009193385.2 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: WELF01
Assembly method:: canu v. 1.6; pScarf v. 1.7-05b
Expected final version:: yes
Genome coverage:: 142.0x
Sequencing technology:: PacBio RSII; Oxford Nanopore MinION

IDs: 5516351 [UID] 16103808 [GenBank] 16575688 [RefSeq]

See Genome Information for Nasonia vitripennis

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_009193385.2	=	GCF_009193385.2	Nvit_psr_1.1	Chromosome	Latest GenBank, Latest RefSeq
GCA_009193385.1	=	GCF_009193385.1	Nvit_psr_1	Contig	Replaced GenBank, Replaced RefSeq

Comment

The unlocalized sequences of chromosomes 1-5 of assembly Nvit_psr_1.1 are in the heterochromatin gap of the relevant chromosome. Their relative order and orientation is not yet determined so they are not placed on the chromosomes, but the relative positions ... are indicated by the map location included on each.  more

Global statistics

Total sequence length	297,309,692
Total ungapped length	297,308,892
Gaps between scaffolds	8
Number of scaffolds	444
Scaffold N50	7,180,486
Scaffold L50	11
Number of contigs	444
Contig N50	7,180,486
Contig L50	11
Total number of chromosomes and plasmids	6
Number of component sequences (WGS or clone)	444

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM020934.1	=	NC_045757.1	16
Chromosome 2	CM020935.1	=	NC_045758.1	12
Chromosome 3	CM020936.1	=	NC_045759.1	14
Chromosome 4	CM020937.1	=	NC_045760.1	10
Chromosome 5	CM020938.1	=	NC_045761.1	8
Chromosome PSR	n/a	n/a	n/a	120
unplaced	n/a	n/a	n/a	251

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	297,309,692	444	297,308,892	7,180,486	0	8
Chromosome 1	AllAssembled moleculeUnlocalized scaffolds	69,858,42737,874,44031,983,987	19316	69,858,22737,874,24031,983,987	7,180,48614,791,1902,742,897	000	220
Chromosome 2	AllAssembled moleculeUnlocalized scaffolds	59,250,39635,393,72923,856,667	14212	59,250,29635,393,62923,856,667	14,740,00720,653,6222,737,242	000	110
Chromosome 3	AllAssembled moleculeUnlocalized scaffolds	47,242,73324,760,11322,482,620	16214	47,242,63324,760,01322,482,620	11,622,73213,137,2812,417,448	000	110
Chromosome 4	AllAssembled moleculeUnlocalized scaffolds	56,454,66733,170,50523,284,162	12210	56,454,56733,170,40523,284,162	8,627,88624,542,5192,974,232	000	110
Chromosome 5	AllAssembled moleculeUnlocalized scaffolds	39,480,97728,269,46011,211,517	1248	39,480,67728,269,16011,211,517	9,170,66514,518,5831,534,225	000	330
Chromosome PSR	AllAssembled moleculeUnlocalized scaffolds	9,203,26409,203,264	1200120	9,203,26409,203,264	128,2060128,206	000	000
unplaced	Assembled molecule	15,819,228	251	15,819,228	131,092	0	0

Assembly

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Nvit_psr_1.1

See Genome Information for Nasonia vitripennis

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

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