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drosAlbom15112-1751.03v1

Organism name:
Drosophila albomicans (flies)
Infraspecific name:
Strain: 15112-1751.03
Sex:
female
BioSample:
SAMN12703415
Submitter:
University of California Berkeley
Date:
2019/11/14
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_009650485.1 (replaced)
RefSeq assembly accession:
GCF_009650485.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Different: chromosome MT.
  • Data displayed for RefSeq version
WGS Project:
WJDZ01
Assembly method:
Minmap/Miniasm v. 1.0
Expected final version:
no
Genome coverage:
50.0x
Sequencing technology:
PacBio RSII

IDs: 5323581 [UID] 15409558 [GenBank] 19437388 [RefSeq]

See Genome Information for Drosophila albomicans

There are 5 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length165,846,275
Total ungapped length165,845,925
Gaps between scaffolds0
Number of scaffolds11
Scaffold N5033,427,555
Scaffold L502
Number of contigs18
Contig N5033,427,555
Contig L502
Total number of chromosomes and plasmids6
Number of component sequences (WGS or clone)11

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_009650505.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome XCM018883.1=NC_047627.10
Chromosome 2LCM018884.1=NC_047628.10
Chromosome 3CM018881.1=NC_047629.10
Chromosome 4CM018882.1=NC_047630.10
Chromosome 2RCM018885.1=NC_047631.10
unplacedn/an/an/a5

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All165,830,42910165,830,07933,427,55570
Chromosome X33,427,555133,427,55533,427,55500
Chromosome 2L30,772,581130,772,53130,772,58110
Chromosome 355,557,198155,557,19855,557,19800
Chromosome 43,955,11713,955,0673,955,11710
Chromosome 2R32,236,572132,236,52232,236,57210
unplaced9,881,40659,881,2065,143,69440
MoleculeTotal
Length
Mitochondrion MT15,846