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ASM965048v2

Organism name:
Drosophila albomicans (flies)
Infraspecific name:
Strain: 15112-1751.03
Sex:
female
BioSample:
SAMN12703415
BioProject:
PRJNA554139
Submitter:
University of California Berkeley
Date:
2022/08/16
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_009650485.2 (latest)
RefSeq assembly accession:
GCF_009650485.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
WJDZ02
Assembly method:
minimap2 + wtdbg2 v. 2
Expected final version:
yes
Genome coverage:
40x
Sequencing technology:
Oxford Nanopore MinION

IDs: 13516531 [UID] 35250698 [GenBank] 37305728 [RefSeq]

See Genome Information for Drosophila albomicans

There are 5 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length167,525,814
Total ungapped length167,525,414
Gaps between scaffolds0
Number of scaffolds219
Scaffold N5035,291,776
Scaffold L502
Number of contigs227
Contig N5025,786,103
Contig L503
Total number of chromosomes and plasmids5
Number of component sequences (WGS or clone)219

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_009650505.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome XCM018883.2=NC_047627.20
Chromosome 2LCM018884.2=NC_047628.20
Chromosome 3CM018881.2=NC_047629.20
Chromosome 4CM018882.2=NC_047630.20
Chromosome 2RCM018885.2=NC_047631.20
unplacedn/an/an/a214

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All167,525,814219167,525,41435,291,77680
Chromosome X33,597,023133,596,97333,597,02310
Chromosome 2L30,469,903130,469,70330,469,90340
Chromosome 355,495,487155,495,43755,495,48710
Chromosome 41,839,96511,839,9651,839,96500
Chromosome 2R35,291,776135,291,67635,291,77620
unplaced10,831,66021410,831,66071,90200