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Source database (GenBank or RefSeq) File type

TDr96_F1_v2_PseudoChromosome.rev07_lg8_w22 25.fasta

Organism name:

Dioscorea cayenensis subsp. rotundata (Guinea yam)

Infraspecific name:

Cultivar: TDr96_F1

BioSample:

SAMD00039982

BioProject:

PRJDB8681

Submitter:

Genetics and Breeding, Iwate Biotechnology Research Center

Date:

2019/11/25

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_009730915.2 (latest)

RefSeq assembly accession:

GCF_009730915.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome Pltd

Data displayed for RefSeq version

WGS Project:

BLBR01

Assembly method:

flye v. 2.4.2; pilon v. 1.23; Purge Haplotigs v. 1.0.4; MSTmap

Genome coverage:

34x

Sequencing technology:

Nanopore PromethION

IDs: 9190671 [UID] 24733668 [GenBank] 24736448 [RefSeq]

See Genome Information for Dioscorea cayenensis

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_009730915.2	≠	GCF_009730915.1	TDr96_F1_v2_PseudoChromosome.rev07_lg8_w22 25.fasta	Chromosome	Latest GenBank, Latest RefSeq
GCA_009730915.1	n/a	n/a	TDr96_F1_v2_PseudoChromosome.rev07_lg8_w22 25.fasta	Scaffold	Replaced GenBank

Comment

Global statistics

Total sequence length	584,308,608
Total ungapped length	579,561,655
Gaps between scaffolds	0
Number of scaffolds	2,254
Scaffold N50	23,441,323
Scaffold L50	11
Number of contigs	7,013
Contig N50	139,833
Contig L50	1,033
Total number of chromosomes and plasmids	29
Number of component sequences (WGS or clone)	2,254

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	BLBR01000001.1	=	NC_052471.1	0
Chromosome 2	BLBR01000002.1	=	NC_052472.1	0
Chromosome 3	BLBR01000003.1	=	NC_052473.1	0
Chromosome 4	BLBR01000004.1	=	NC_052474.1	0
Chromosome 5	BLBR01000005.1	=	NC_052475.1	0
Chromosome 6	BLBR01000006.1	=	NC_052476.1	0
Chromosome 7	BLBR01000007.1	=	NC_052477.1	0
Chromosome 8	BLBR01000008.1	=	NC_052478.1	0
Chromosome 9	BLBR01000009.1	=	NC_052479.1	0
Chromosome 10	BLBR01000010.1	=	NC_052480.1	0
Chromosome 11	BLBR01000011.1	=	NC_052481.1	0
Chromosome 12	BLBR01000012.1	=	NC_052482.1	0
Chromosome 13	BLBR01000013.1	=	NC_052483.1	0
Chromosome 14	BLBR01000014.1	=	NC_052484.1	0
Chromosome 15	BLBR01000015.1	=	NC_052485.1	0
Chromosome 16	BLBR01000016.1	=	NC_052486.1	0
Chromosome 17	BLBR01000017.1	=	NC_052487.1	0
Chromosome 18	BLBR01000018.1	=	NC_052488.1	0
Chromosome 19	BLBR01000019.1	=	NC_052489.1	0
Chromosome 20	BLBR01000020.1	=	NC_052490.1	0
Chromosome 21	BLBR01000021.1	=	NC_052491.1	0
Chromosome 22	BLBR01000022.1	=	NC_052492.1	0
Chromosome 23	BLBR01000023.1	=	NC_052493.1	0
Chromosome 24	BLBR01000024.1	=	NC_052494.1	0
Chromosome 25	BLBR01000025.1	=	NC_052495.1	0
Chromosome 26	BLBR01000026.1	=	NC_052496.1	0
Chromosome 27	BLBR01000027.1	=	NC_052497.1	0
Chromosome 28	BLBR01000028.1	=	NC_052498.1	0
unplaced	n/a	n/a	n/a	2,225

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	584,153,202	2,253	579,406,249	23,441,323	4,759
Chromosome 1	30,583,384	1	30,240,384	30,583,384	343
Chromosome 2	23,804,961	1	23,532,961	23,804,961	272
Chromosome 3	19,070,176	1	18,868,076	19,070,176	203
Chromosome 4	22,296,860	1	22,077,860	22,296,860	219
Chromosome 5	32,752,956	1	32,465,956	32,752,956	287
Chromosome 6	21,737,839	1	21,507,829	21,737,839	231
Chromosome 7	31,772,377	1	31,414,167	31,772,377	361
Chromosome 8	22,086,263	1	21,945,263	22,086,263	141
Chromosome 9	31,110,798	1	30,689,698	31,110,798	422
Chromosome 10	23,486,204	1	23,255,204	23,486,204	231
Chromosome 11	22,758,979	1	22,567,969	22,758,979	192
Chromosome 12	21,946,851	1	21,785,841	21,946,851	162
Chromosome 13	8,344,122	1	8,252,122	8,344,122	92
Chromosome 14	21,397,214	1	21,250,204	21,397,214	148
Chromosome 15	23,441,323	1	23,306,323	23,441,323	135
Chromosome 16	24,109,376	1	23,836,119	24,109,376	274
Chromosome 17	22,358,743	1	22,191,743	22,358,743	167
Chromosome 18	24,280,954	1	24,107,954	24,280,954	173
Chromosome 19	31,611,005	1	31,450,995	31,611,005	161
Chromosome 20	33,023,525	1	32,560,515	33,023,525	464
Chromosome 21	4,051,331	1	4,011,331	4,051,331	40
Chromosome 22	505,872	1	497,872	505,872	8
Chromosome 23	86,346	1	85,346	86,346	1
Chromosome 24	1,002,403	1	989,403	1,002,403	13
Chromosome 25	783,418	1	773,418	783,418	10
Chromosome 26	1,416,592	1	1,410,592	1,416,592	6
Chromosome 27	121,368	1	120,368	121,368	1
Chromosome 28	68,823	1	67,823	68,823	1
unplaced	84,143,139	2,225	84,142,913	63,917	1

Assembly

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TDr96_F1_v2_PseudoChromosome.rev07_lg8_w22 25.fasta

See Genome Information for Dioscorea cayenensis

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Global assembly definition

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Assembly Unit Name
Primary Assembly
non-nuclear