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Source database (GenBank or RefSeq) File type

Dplex_v4

Organism name:

Danaus plexippus plexippus (monarch butterfly)

Isolate:

F-2

Sex:

female

BioSample:

SAMN01758044

BioProject:

PRJNA564985

Submitter:

Princeton University

Date:

2019/12/11

Assembly level:

Chromosome

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_009731565.1 (latest)

RefSeq assembly accession:

GCF_009731565.1 (suppressed) see latest RefSeq assembly for this species

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

DUEA01

Assembly method:

Dovetail Genomics HiRise v. MAR-2018

Expected final version:

yes

Genome coverage:

522.0x

Sequencing technology:

Illumina HiSeq

IDs: 5384191 [UID] 15602328 [GenBank] 17062848 [RefSeq]

See Genome Information for Danaus plexippus

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_009731565.1	=	GCF_009731565.1	Dplex_v4	Chromosome	Latest GenBank, RefSeq suppressed

Comment

We generated Chicago (SRR10116370) and Hi-C (SRR10116369) libraries, and mapped those reads to the scaffolds of the Danaus plexippus assembly GCA_000235995.2 (WGS project AGBW02000000) to produce contact maps. These contact maps were used to order and orient the scaffolds ... of GCA_000235995.2 into full chromosome and to introduce some breaks to correct misassemblies. The result was this genome assembly, DUEA00000000.  more

Global statistics

Total sequence length	248,676,414
Total ungapped length	241,870,860
Gaps between scaffolds	0
Number of scaffolds	4,115
Scaffold N50	9,209,872
Scaffold L50	12
Number of contigs	10,791
Contig N50	108,026
Contig L50	567
Total number of chromosomes and plasmids	30
Number of component sequences (WGS or clone)	4,115

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 2	CM019184.1	=	NC_045808.1	0
Chromosome 3	CM019185.1	=	NC_045809.1	0
Chromosome 4	CM019186.1	=	NC_045810.1	0
Chromosome 5	CM019187.1	=	NC_045811.1	0
Chromosome 6	CM019188.1	=	NC_045812.1	0
Chromosome 7	CM019189.1	=	NC_045813.1	0
Chromosome 8	CM019190.1	=	NC_045814.1	0
Chromosome 9	CM019191.1	=	NC_045815.1	0
Chromosome 10	CM019192.1	=	NC_045816.1	0
Chromosome 11	CM019193.1	=	NC_045817.1	0
Chromosome 12	CM019194.1	=	NC_045818.1	0
Chromosome 13	CM019195.1	=	NC_045819.1	0
Chromosome 14	CM019196.1	=	NC_045820.1	0
Chromosome 15	CM019197.1	=	NC_045821.1	0
Chromosome 16	CM019198.1	=	NC_045822.1	0
Chromosome 17	CM019199.1	=	NC_045823.1	0
Chromosome 18	CM019200.1	=	NC_045824.1	0
Chromosome 19	CM019201.1	=	NC_045825.1	0
Chromosome 20	CM019202.1	=	NC_045826.1	0
Chromosome 21	CM019203.1	=	NC_045827.1	0
Chromosome 22	CM019204.1	=	NC_045828.1	0
Chromosome 23	CM019205.1	=	NC_045829.1	0
Chromosome 24	CM019206.1	=	NC_045830.1	0
Chromosome 25	CM019207.1	=	NC_045831.1	0
Chromosome 26	CM019208.1	=	NC_045832.1	0
Chromosome 27	CM019209.1	=	NC_045833.1	0
Chromosome 28	CM019210.1	=	NC_045834.1	0
Chromosome 29	CM019211.1	=	NC_045835.1	0
Chromosome Z	CM019213.1	=	NC_045836.1	0
Chromosome 30	CM019212.1	=	NC_045837.1	0
unplaced	n/a	n/a	n/a	4,085

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	248,676,414	4,115	241,870,860	9,209,872	6,676
Chromosome 2	10,631,990	1	10,397,393	10,631,990	247
Chromosome 3	10,450,245	1	10,165,381	10,450,245	257
Chromosome 4	10,414,450	1	10,251,878	10,414,450	176
Chromosome 5	10,184,249	1	10,052,842	10,184,249	166
Chromosome 6	10,039,743	1	9,856,606	10,039,743	198
Chromosome 7	9,950,675	1	9,786,697	9,950,675	192
Chromosome 8	9,826,000	1	9,640,277	9,826,000	217
Chromosome 9	9,622,331	1	9,445,217	9,622,331	185
Chromosome 10	9,320,052	1	9,043,829	9,320,052	274
Chromosome 11	9,273,636	1	9,122,559	9,273,636	204
Chromosome 12	9,209,872	1	9,073,974	9,209,872	190
Chromosome 13	8,907,986	1	8,621,075	8,907,986	261
Chromosome 14	8,886,595	1	8,682,281	8,886,595	218
Chromosome 15	8,615,111	1	8,446,916	8,615,111	209
Chromosome 16	8,545,482	1	8,238,205	8,545,482	247
Chromosome 17	8,449,262	1	8,239,635	8,449,262	239
Chromosome 18	8,166,185	1	8,081,535	8,166,185	136
Chromosome 19	7,845,940	1	7,674,852	7,845,940	173
Chromosome 20	7,367,651	1	7,044,327	7,367,651	333
Chromosome 21	7,243,763	1	7,008,939	7,243,763	232
Chromosome 22	7,084,546	1	6,838,525	7,084,546	250
Chromosome 23	6,814,233	1	6,554,153	6,814,233	270
Chromosome 24	6,514,101	1	6,189,808	6,514,101	293
Chromosome 25	5,644,642	1	5,406,386	5,644,642	231
Chromosome 26	5,380,037	1	5,264,349	5,380,037	141
Chromosome 27	4,150,802	1	3,932,100	4,150,802	203
Chromosome 28	3,992,836	1	3,789,591	3,992,836	226
Chromosome 29	3,625,418	1	3,386,643	3,625,418	197
Chromosome Z	15,616,146	1	15,527,641	15,616,146	80
Chromosome 30	3,411,326	1	3,141,415	3,411,326	233
unplaced	3,491,109	4,085	2,965,831	960	198

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Dplex_v4

See Genome Information for Danaus plexippus

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

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