Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

mZalCal1.pri.v2

Organism name:

Zalophus californianus (California sea lion)

Isolate:

mZalCal1

Sex:

male

BioSample:

SAMN12368149

BioProject:

PRJNA559673

Submitter:

Vertebrate Genomes Project

Date:

2020/07/14

Assembly type:

haploid (principal pseudohaplotype of diploid)

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_009762305.2 (latest)

RefSeq assembly accession:

GCF_009762305.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Different: chromosome MT.

Data displayed for RefSeq version

WGS Project:

WPOA02

Assembly method:

FALCON v. 2018.31.08-03.06; FALCON-Unzip v. 7.0.1.66975; purge_dups v. v1; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. SMRTLink7.0.1; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2020-03-13; VGP assembly pipeline individual v. 1.6

Expected final version:

Genome coverage:

80.51x

Sequencing technology:

PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS

Linked assembly:

GCA_009762295.2 (alternate pseudohaplotype of diploid)

IDs: 7357451 [UID] 20353938 [GenBank] 21092758 [RefSeq]

See Genome Information for Zalophus californianus

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_009762305.2	≠	GCF_009762305.2	mZalCal1.pri.v2	Chromosome	Latest GenBank, Latest RefSeq
GCA_009762305.1	n/a	n/a	mZalCal1.pri	Chromosome	Replaced GenBank

Comment

This assembly represents the principal haplotype of the diploid genome Zalophus californianus and includes the chromosomes. The alternate haplotype sequences are in WGS project WPOB00000000

Global statistics

Total sequence length	2,409,685,272
Total ungapped length	2,391,147,510
Gaps between scaffolds	0
Number of scaffolds	47
Scaffold N50	147,124,152
Scaffold L50	7
Number of contigs	230
Contig N50	32,626,160
Contig L50	23
Total number of chromosomes and plasmids	20
Number of component sequences (WGS or clone)	47

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM019802.2	=	NC_045595.1	0
Chromosome 2	CM019803.2	=	NC_045596.1	0
Chromosome 3	CM019804.2	=	NC_045597.1	0
Chromosome 4	CM019805.2	=	NC_045598.1	0
Chromosome 5	CM019806.2	=	NC_045599.1	0
Chromosome 6	CM019807.2	=	NC_045600.1	0
Chromosome 7	CM019808.2	=	NC_045601.1	0
Chromosome 8	CM019809.2	=	NC_045602.1	0
Chromosome 9	CM019810.2	=	NC_045603.1	0
Chromosome 10	CM019811.2	=	NC_045604.1	0
Chromosome 11	CM019812.2	=	NC_045605.1	0
Chromosome 12	CM019813.2	=	NC_045606.1	0
Chromosome 13	CM019814.2	=	NC_045607.1	0
Chromosome 14	CM019815.2	=	NC_045608.1	0
Chromosome 15	CM019816.2	=	NC_045609.1	0
Chromosome 16	CM019817.2	=	NC_045610.1	0
Chromosome 17	CM019818.2	=	NC_045611.1	0
Chromosome X	CM019819.2	=	NC_045612.1	0
Chromosome Y	CM019820.2	=	NC_045613.1	0
unplaced	n/a	n/a	n/a	27

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,409,668,595	46	2,391,130,833	147,124,152	183
Chromosome 1	216,121,386	1	215,407,855	216,121,386	11
Chromosome 2	203,405,709	1	202,760,817	203,405,709	13
Chromosome 3	195,893,461	1	194,760,614	195,893,461	5
Chromosome 4	191,600,665	1	189,480,582	191,600,665	7
Chromosome 5	154,431,508	1	153,185,604	154,431,508	11
Chromosome 6	147,960,056	1	146,196,704	147,960,056	11
Chromosome 7	147,124,152	1	146,555,676	147,124,152	7
Chromosome 8	140,579,763	1	140,445,592	140,579,763	4
Chromosome 9	140,387,268	1	139,468,950	140,387,268	14
Chromosome 10	114,256,090	1	111,360,896	114,256,090	18
Chromosome 11	113,586,643	1	113,467,202	113,586,643	8
Chromosome 12	107,195,179	1	106,519,089	107,195,179	6
Chromosome 13	95,463,665	1	94,284,842	95,463,665	5
Chromosome 14	94,255,706	1	93,316,288	94,255,706	12
Chromosome 15	89,155,059	1	89,144,417	89,155,059	7
Chromosome 16	62,786,583	1	61,896,250	62,786,583	10
Chromosome 17	60,388,317	1	60,377,828	60,388,317	3
Chromosome X	129,409,743	1	127,013,412	129,409,743	18
Chromosome Y	3,986,568	1	3,810,322	3,986,568	5
unplaced	1,681,074	27	1,677,893	96,369	8

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Send to:

Download Assembly

mZalCal1.pri.v2

See Genome Information for Zalophus californianus

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear