Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

fNotCel1.pri

Organism name:

Notolabrus celidotus (New Zealand spotty)

Isolate:

fNotCel1

Sex:

male

BioSample:

SAMN12623201

BioProject:

PRJNA561956

Submitter:

Vertebrate Genomes Project

Date:

2019/12/18

Assembly type:

haploid (principal pseudohaplotype of diploid)

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_009762535.1 (latest)

RefSeq assembly accession:

GCF_009762535.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

WGS Project:

WOTL01

Assembly method:

FALCON v. 2019-Jan-23patch1; FALCON-Unzip v. 2019-Jan-23patch1; purge_dups v. v1; scaff10x v. 4.1; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; longranger align v. 2.2.2; gEVAL manual curation v. 2019-11-08; VGP assembly pipeline individual v. 1.6

Expected final version:

Genome coverage:

71.06x

Sequencing technology:

PacBio Sequel I CLR; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS

Linked assembly:

GCA_009762545.1 (alternate pseudohaplotype of diploid)

IDs: 5395161 [UID] 15641368 [GenBank] 19657818 [RefSeq]

See Genome Information for Notolabrus celidotus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_009762535.1	≠	GCF_009762535.1	fNotCel1.pri	Chromosome	Latest GenBank, Latest RefSeq

Comment

Due to size limit cut off, this submission does not include a 137 bp scaffold_651_arrow_ctg1, which does not match any sequence in the current NCBI database, but was assembled in this species. The assembly with that scaffold included can ... be found in Genome Ark as of the time of this submission: https://vgp.github.io/genomeark/Notolabrus_celidotus/

This assembly represents the principal haplotype of the diploid genome Notolabrus celidotus and includes the chromosomes. The alternate haplotype sequences are in WGS project WOTM00000000  more

Global statistics

Total sequence length	846,744,125
Total ungapped length	832,475,649
Gaps between scaffolds	0
Number of scaffolds	467
Scaffold N50	37,090,664
Scaffold L50	11
Number of contigs	1,600
Contig N50	3,748,462
Contig L50	64
Total number of chromosomes and plasmids	24
Number of component sequences (WGS or clone)	467

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM019771.1	=	NC_048272.1	0
Chromosome 2	CM019772.1	=	NC_048273.1	0
Chromosome 3	CM019773.1	=	NC_048274.1	0
Chromosome 4	CM019774.1	=	NC_048275.1	0
Chromosome 5	CM019775.1	=	NC_048276.1	0
Chromosome 6	CM019776.1	=	NC_048277.1	0
Chromosome 7	CM019777.1	=	NC_048278.1	0
Chromosome 8	CM019778.1	=	NC_048279.1	0
Chromosome 9	CM019779.1	=	NC_048280.1	0
Chromosome 10	CM019780.1	=	NC_048281.1	0
Chromosome 11	CM019781.1	=	NC_048282.1	0
Chromosome 12	CM019782.1	=	NC_048283.1	0
Chromosome 13	CM019783.1	=	NC_048284.1	0
Chromosome 14	CM019784.1	=	NC_048285.1	0
Chromosome 15	CM019785.1	=	NC_048286.1	0
Chromosome 16	CM019786.1	=	NC_048287.1	0
Chromosome 17	CM019787.1	=	NC_048288.1	0
Chromosome 18	CM019788.1	=	NC_048289.1	0
Chromosome 19	CM019789.1	=	NC_048290.1	0
Chromosome 20	CM019790.1	=	NC_048291.1	0
Chromosome 21	CM019791.1	=	NC_048292.1	0
Chromosome 22	CM019792.1	=	NC_048293.1	0
Chromosome 23	CM019793.1	=	NC_048294.1	0
Chromosome 24	CM019794.1	=	NC_048295.1	0
unplaced	n/a	n/a	n/a	443

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	846,744,125	467	832,475,649	37,090,664	1,133
Chromosome 1	42,375,795	1	42,140,237	42,375,795	30
Chromosome 2	40,785,429	1	39,302,235	40,785,429	38
Chromosome 3	40,766,282	1	40,474,892	40,766,282	26
Chromosome 4	39,974,156	1	39,039,882	39,974,156	46
Chromosome 5	39,651,149	1	38,045,812	39,651,149	68
Chromosome 6	39,177,102	1	38,864,144	39,177,102	53
Chromosome 7	38,744,194	1	38,059,197	38,744,194	34
Chromosome 8	38,341,478	1	37,217,500	38,341,478	44
Chromosome 9	38,134,276	1	37,807,738	38,134,276	49
Chromosome 10	37,353,604	1	36,387,625	37,353,604	46
Chromosome 11	37,090,664	1	36,839,169	37,090,664	38
Chromosome 12	35,863,781	1	35,343,662	35,863,781	30
Chromosome 13	35,656,165	1	35,310,959	35,656,165	42
Chromosome 14	34,412,615	1	32,631,868	34,412,615	38
Chromosome 15	34,117,808	1	33,844,414	34,117,808	37
Chromosome 16	32,414,185	1	32,327,091	32,414,185	33
Chromosome 17	31,963,694	1	31,661,922	31,963,694	41
Chromosome 18	31,581,663	1	31,271,431	31,581,663	28
Chromosome 19	31,241,289	1	31,037,960	31,241,289	33
Chromosome 20	29,532,625	1	29,213,370	29,532,625	53
Chromosome 21	29,191,746	1	28,794,542	29,191,746	36
Chromosome 22	29,024,364	1	28,922,575	29,024,364	29
Chromosome 23	26,918,061	1	25,991,890	26,918,061	37
Chromosome 24	12,264,218	1	11,877,962	12,264,218	21
unplaced	20,167,782	443	20,067,572	80,782	203

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Send to:

Download Assembly

fNotCel1.pri

See Genome Information for Notolabrus celidotus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Global assembly definition

Assembly statistics