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Source database (GenBank or RefSeq) File type

fHipHip1.pri

Organism name:

Hippoglossus hippoglossus (Atlantic halibut)

Isolate:

fHipHip1

Sex:

male

BioSample:

SAMN12629501

BioProject:

PRJNA562001

Submitter:

Vertebrate Genomes Project

Date:

2019/12/31

Assembly type:

haploid (principal pseudohaplotype of diploid)

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_009819705.1 (latest)

RefSeq assembly accession:

GCF_009819705.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Different: chromosome MT.

Data displayed for RefSeq version

WGS Project:

WOYB01

Assembly method:

FALCON v. 2018.31.08-03.06; FALCON-Unzip v. smrtlink_6.0.0.47841; purge_haplotigs v. 1.0.3; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. smrtlink_6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-11-27; VGP assembly pipeline individual v. 1.5

Expected final version:

Genome coverage:

56.23x

Sequencing technology:

PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS

Linked assembly:

GCA_009819745.1 (alternate pseudohaplotype of diploid)

IDs: 5428201 [UID] 15715038 [GenBank] 19128558 [RefSeq]

See Genome Information for Hippoglossus hippoglossus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_009819705.1	≠	GCF_009819705.1	fHipHip1.pri	Chromosome	Latest GenBank, Latest RefSeq

Comment

This assembly represents the principal haplotype of the diploid genome Hippoglossus hippoglossus and includes the chromosomes. The alternate haplotype sequences are in WGS project WOYC00000000

Global statistics

Total sequence length	596,792,615
Total ungapped length	593,379,225
Gaps between scaffolds	0
Number of scaffolds	57
Scaffold N50	26,312,018
Scaffold L50	11
Number of contigs	347
Contig N50	7,020,318
Contig L50	23
Total number of chromosomes and plasmids	25
Number of component sequences (WGS or clone)	57

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM020190.1	=	NC_047151.1	0
Chromosome 2	CM020191.1	=	NC_047152.1	0
Chromosome 3	CM020192.1	=	NC_047153.1	0
Chromosome 4	CM020193.1	=	NC_047154.1	0
Chromosome 5	CM020194.1	=	NC_047155.1	0
Chromosome 6	CM020195.1	=	NC_047156.1	0
Chromosome 7	CM020196.1	=	NC_047157.1	0
Chromosome 8	CM020197.1	=	NC_047158.1	0
Chromosome 9	CM020198.1	=	NC_047159.1	0
Chromosome 10	CM020199.1	=	NC_047160.1	0
Chromosome 11	CM020200.1	=	NC_047161.1	0
Chromosome 12	CM020201.1	=	NC_047162.1	0
Chromosome 13	CM020202.1	=	NC_047163.1	0
Chromosome 14	CM020203.1	=	NC_047164.1	0
Chromosome 15	CM020204.1	=	NC_047165.1	0
Chromosome 16	CM020205.1	=	NC_047166.1	0
Chromosome 17	CM020206.1	=	NC_047167.1	0
Chromosome 18	CM020207.1	=	NC_047168.1	0
Chromosome 19	CM020208.1	=	NC_047169.1	0
Chromosome 20	CM020209.1	=	NC_047170.1	0
Chromosome 21	CM020210.1	=	NC_047171.1	0
Chromosome 22	CM020211.1	=	NC_047172.1	0
Chromosome 23	CM020212.1	=	NC_047173.1	0
Chromosome 24	CM020213.1	=	NC_047174.1	0
unplaced	n/a	n/a	n/a	32

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	596,775,069	56	593,361,679	26,312,018	290
Chromosome 1	30,597,443	1	30,227,058	30,597,443	24
Chromosome 2	11,297,635	1	11,297,435	11,297,635	2
Chromosome 3	32,675,587	1	32,417,558	32,675,587	13
Chromosome 4	28,512,877	1	28,325,035	28,512,877	11
Chromosome 5	30,753,830	1	30,496,763	30,753,830	18
Chromosome 6	28,531,750	1	28,418,931	28,531,750	9
Chromosome 7	28,364,880	1	28,222,057	28,364,880	15
Chromosome 8	23,524,515	1	23,436,174	23,524,515	14
Chromosome 9	29,170,869	1	29,048,040	29,170,869	11
Chromosome 10	27,686,247	1	27,508,942	27,686,247	8
Chromosome 11	22,214,583	1	22,213,783	22,214,583	8
Chromosome 12	21,256,114	1	21,255,414	21,256,114	7
Chromosome 13	29,083,852	1	29,049,148	29,083,852	20
Chromosome 14	24,953,334	1	24,782,732	24,953,334	18
Chromosome 15	25,621,292	1	25,166,742	25,621,292	14
Chromosome 16	27,148,517	1	27,147,904	27,148,517	7
Chromosome 17	24,735,652	1	24,734,952	24,735,652	7
Chromosome 18	16,627,714	1	16,600,964	16,627,714	18
Chromosome 19	20,912,647	1	20,817,636	20,912,647	5
Chromosome 20	20,800,843	1	20,799,943	20,800,843	9
Chromosome 21	25,055,940	1	24,853,719	25,055,940	18
Chromosome 22	26,312,018	1	25,973,329	26,312,018	19
Chromosome 23	18,431,247	1	18,287,764	18,431,247	4
Chromosome 24	21,435,488	1	21,210,961	21,435,488	4
unplaced	1,070,195	32	1,068,695	51,591	7

Assembly

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fHipHip1.pri

See Genome Information for Hippoglossus hippoglossus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear