Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

mMusErm1.Pri

Organism name:

Mustela erminea (ermine)

Isolate:

mMusErm1

Sex:

male

BioSample:

SAMN12611999

BioProject:

PRJNA561931

Submitter:

Vertebrate Genomes Project

Date:

2020/01/03

Assembly type:

haploid (principal pseudohaplotype of diploid)

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_009829155.1 (latest)

RefSeq assembly accession:

GCF_009829155.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Different: chromosome MT.

Data displayed for RefSeq version

WGS Project:

WNLY01

Assembly method:

FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_dups v. 1; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.2; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-10-17; VGP assembly pipeline individual v. 1.6

Expected final version:

Genome coverage:

62.86x

Sequencing technology:

PacBio Sequel; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS

Linked assembly:

GCA_009829165.1 (alternate pseudohaplotype of diploid)

IDs: 5432811 [UID] 15730418 [GenBank] 15887268 [RefSeq]

See Genome Information for Mustela erminea

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_009829155.1	≠	GCF_009829155.1	mMusErm1.Pri	Chromosome	Latest GenBank, Latest RefSeq

Comment

This assembly represents the principal haplotype of the diploid genome Mustela erminea and includes the chromosomes. The alternate haplotype sequences are in WGS project WNLZ00000000

Global statistics

Total sequence length	2,445,217,270
Total ungapped length	2,423,733,294
Gaps between scaffolds	0
Number of scaffolds	94
Scaffold N50	130,149,454
Scaffold L50	8
Number of contigs	293
Contig N50	36,329,944
Contig L50	19
Total number of chromosomes and plasmids	24
Number of component sequences (WGS or clone)	94

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM020568.1	=	NC_045614.1	0
Chromosome 2	CM020569.1	=	NC_045615.1	0
Chromosome 3	CM020570.1	=	NC_045616.1	0
Chromosome 4	CM020571.1	=	NC_045617.1	0
Chromosome 5	CM020572.1	=	NC_045618.1	0
Chromosome 6	CM020573.1	=	NC_045619.1	0
Chromosome 7	CM020574.1	=	NC_045620.1	0
Chromosome 8	CM020575.1	=	NC_045621.1	0
Chromosome 9	CM020576.1	=	NC_045622.1	0
Chromosome 10	CM020577.1	=	NC_045623.1	0
Chromosome 11	CM020578.1	=	NC_045624.1	0
Chromosome 12	CM020579.1	=	NC_045625.1	0
Chromosome 13	CM020580.1	=	NC_045626.1	0
Chromosome 14	CM020581.1	=	NC_045627.1	0
Chromosome 15	CM020582.1	=	NC_045628.1	0
Chromosome 16	CM020583.1	=	NC_045629.1	0
Chromosome 17	CM020584.1	=	NC_045630.1	0
Chromosome 18	CM020585.1	=	NC_045631.1	0
Chromosome 19	CM020586.1	=	NC_045632.1	0
Chromosome 20	CM020587.1	=	NC_045633.1	0
Chromosome 21	CM020588.1	=	NC_045634.1	0
Chromosome X	CM020589.1	=	NC_045635.1	0
Chromosome Y	CM020590.1	=	NC_045636.1	0
unplaced	n/a	n/a	n/a	70

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,445,200,799	93	2,423,716,823	130,149,454	199
Chromosome 1	220,353,689	1	220,222,587	220,353,689	6
Chromosome 2	165,678,983	1	165,447,997	165,678,983	5
Chromosome 3	164,385,424	1	163,820,283	164,385,424	18
Chromosome 4	151,340,014	1	151,141,017	151,340,014	6
Chromosome 5	148,087,453	1	146,959,159	148,087,453	5
Chromosome 6	145,111,546	1	143,015,393	145,111,546	18
Chromosome 7	141,458,160	1	137,313,423	141,458,160	5
Chromosome 8	114,725,041	1	114,687,886	114,725,041	4
Chromosome 9	114,096,343	1	113,864,113	114,096,343	5
Chromosome 10	109,748,187	1	109,187,042	109,748,187	3
Chromosome 11	106,878,659	1	106,836,651	106,878,659	2
Chromosome 12	93,615,603	1	92,781,743	93,615,603	6
Chromosome 13	92,899,309	1	92,899,209	92,899,309	1
Chromosome 14	92,140,016	1	88,946,667	92,140,016	23
Chromosome 15	86,137,365	1	83,887,805	86,137,365	8
Chromosome 16	85,466,132	1	85,347,246	85,466,132	5
Chromosome 17	70,820,203	1	68,633,775	70,820,203	9
Chromosome 18	61,922,212	1	61,475,447	61,922,212	12
Chromosome 19	60,724,788	1	60,479,007	60,724,788	5
Chromosome 20	40,208,309	1	39,932,454	40,208,309	7
Chromosome 21	40,207,010	1	40,206,927	40,207,010	1
Chromosome X	130,149,454	1	128,193,888	130,149,454	18
Chromosome Y	5,451,993	1	4,849,298	5,451,993	8
unplaced	3,594,906	70	3,587,806	90,466	19

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Send to:

Download Assembly

mMusErm1.Pri

See Genome Information for Mustela erminea

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear