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Source database (GenBank or RefSeq) File type

BCGSAC_Cfer_1.0

Organism name:

Camelus ferus (Wild Bactrian camel)

Isolate:

YT-003-E

Sex:

male

BioSample:

SAMN12102236

BioProject:

PRJNA550024

Submitter:

The Bactrian Camels Genome Sequencing and Analysis Consortium

Date:

2020/01/08

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_009834535.1 (latest)

RefSeq assembly accession:

GCF_009834535.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

VSZR01

Assembly method:

FALCON v. FEB-2018; LACHESIS v. MAR-2018

Expected final version:

yes

Genome coverage:

50.0x

Sequencing technology:

PacBio Sequel; Hi-C

IDs: 5435531 [UID] 15738348 [GenBank] 16374438 [RefSeq]

See Genome Information for Camelus ferus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_009834535.1	≠	GCF_009834535.1	BCGSAC_Cfer_1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	2,087,093,976
Total ungapped length	2,086,859,476
Gaps between scaffolds	0
Number of scaffolds	2,043
Scaffold N50	76,025,729
Scaffold L50	11
Number of contigs	4,388
Contig N50	5,365,398
Contig L50	112
Total number of chromosomes and plasmids	38
Number of component sequences (WGS or clone)	2,043

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM020768.1	=	NC_045696.1	0
Chromosome 2	CM020769.1	=	NC_045697.1	0
Chromosome 3	CM020770.1	=	NC_045698.1	0
Chromosome 4	CM020771.1	=	NC_045699.1	0
Chromosome 5	CM020772.1	=	NC_045700.1	0
Chromosome 6	CM020773.1	=	NC_045701.1	0
Chromosome 7	CM020774.1	=	NC_045702.1	0
Chromosome 8	CM020775.1	=	NC_045703.1	0
Chromosome 9	CM020776.1	=	NC_045704.1	0
Chromosome 10	CM020777.1	=	NC_045705.1	0
Chromosome 11	CM020778.1	=	NC_045706.1	0
Chromosome 12	CM020779.1	=	NC_045707.1	0
Chromosome 13	CM020780.1	=	NC_045708.1	0
Chromosome 14	CM020781.1	=	NC_045709.1	0
Chromosome 15	CM020782.1	=	NC_045710.1	0
Chromosome 16	CM020783.1	=	NC_045711.1	0
Chromosome 17	CM020784.1	=	NC_045712.1	0
Chromosome 18	CM020785.1	=	NC_045713.1	0
Chromosome 19	CM020786.1	=	NC_045714.1	0
Chromosome 20	CM020787.1	=	NC_045715.1	0
Chromosome 21	CM020788.1	=	NC_045716.1	0
Chromosome 22	CM020789.1	=	NC_045717.1	0
Chromosome 23	CM020790.1	=	NC_045718.1	0
Chromosome 24	CM020791.1	=	NC_045719.1	0
Chromosome 25	CM020792.1	=	NC_045720.1	0
Chromosome 26	CM020793.1	=	NC_045721.1	0
Chromosome 27	CM020794.1	=	NC_045722.1	0
Chromosome 28	CM020795.1	=	NC_045723.1	0
Chromosome 29	CM020796.1	=	NC_045724.1	0
Chromosome 30	CM020797.1	=	NC_045725.1	0
Chromosome 31	CM020798.1	=	NC_045726.1	0
Chromosome 32	CM020799.1	=	NC_045727.1	0
Chromosome 33	CM020800.1	=	NC_045728.1	0
Chromosome 34	CM020801.1	=	NC_045729.1	0
Chromosome 35	CM020802.1	=	NC_045730.1	0
Chromosome 36	CM020803.1	=	NC_045731.1	0
Chromosome X	CM020804.1	=	NC_045732.1	0
unplaced	n/a	n/a	n/a	2,005

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,087,077,296	2,042	2,086,842,796	76,025,729	2,345
Chromosome 1	122,453,268	1	122,446,568	122,453,268	67
Chromosome 2	121,270,977	1	121,263,377	121,270,977	76
Chromosome 3	116,890,316	1	116,887,716	116,890,316	26
Chromosome 4	76,124,947	1	76,115,447	76,124,947	95
Chromosome 5	97,643,362	1	97,637,562	97,643,362	58
Chromosome 6	94,313,465	1	94,309,865	94,313,465	36
Chromosome 7	84,585,969	1	84,582,769	84,585,969	32
Chromosome 8	76,025,729	1	76,017,829	76,025,729	79
Chromosome 9	80,542,791	1	80,538,591	80,542,791	42
Chromosome 10	72,405,913	1	72,402,813	72,405,913	31
Chromosome 11	78,620,977	1	78,617,077	78,620,977	39
Chromosome 12	65,961,363	1	65,958,163	65,961,363	32
Chromosome 13	69,130,816	1	69,125,316	69,130,816	55
Chromosome 14	68,617,425	1	68,613,725	68,617,425	37
Chromosome 15	55,737,570	1	55,733,970	55,737,570	36
Chromosome 16	57,465,459	1	57,461,459	57,465,459	40
Chromosome 17	49,638,757	1	49,636,557	49,638,757	22
Chromosome 18	37,759,610	1	37,754,210	37,759,610	54
Chromosome 19	43,704,410	1	43,701,410	43,704,410	30
Chromosome 20	41,063,961	1	41,060,761	41,063,961	32
Chromosome 21	29,907,171	1	29,905,571	29,907,171	16
Chromosome 22	27,488,461	1	27,486,561	27,488,461	19
Chromosome 23	33,771,694	1	33,769,594	33,771,694	21
Chromosome 24	26,376,509	1	26,370,409	26,376,509	61
Chromosome 25	39,817,190	1	39,813,490	39,817,190	37
Chromosome 26	30,432,573	1	30,427,273	30,432,573	53
Chromosome 27	27,629,633	1	27,626,333	27,629,633	33
Chromosome 28	9,275,215	1	9,274,815	9,275,215	4
Chromosome 29	28,622,024	1	28,619,624	28,622,024	24
Chromosome 30	25,730,914	1	25,728,414	25,730,914	25
Chromosome 31	20,268,452	1	20,261,552	20,268,452	69
Chromosome 32	25,176,080	1	25,172,780	25,176,080	33
Chromosome 33	21,415,058	1	21,412,958	21,415,058	21
Chromosome 34	21,481,498	1	21,480,498	21,481,498	10
Chromosome 35	27,748,459	1	27,746,259	27,748,459	22
Chromosome 36	29,323,073	1	29,285,273	29,323,073	378
Chromosome X	102,155,050	1	102,095,050	102,155,050	600
unplaced	50,501,157	2,005	50,501,157	53,083	0

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Download Assembly

BCGSAC_Cfer_1.0

See Genome Information for Camelus ferus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear