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UCI_Dpse_MV25

Organism name:
Drosophila pseudoobscura (flies)
Infraspecific name:
Strain: MV2-25
Sex:
female
BioSample:
SAMN13616452
BioProject:
PRJNA596268
Submitter:
University of California, Irvine
Date:
2020/03/03
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_009870125.2 (latest)
RefSeq assembly accession:
GCF_009870125.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
WVEN01
Assembly method:
Canu v. 1.7
Expected final version:
yes
Genome coverage:
280.0x
Sequencing technology:
PacBio Sequel

IDs: 6095571 [UID] 17341138 [GenBank] 18530598 [RefSeq]

See Genome Information for Drosophila pseudoobscura

There are 10 assemblies for this organism

See more

History (Show revision history)

Comment

The sequence of WVEN01000006 and CM020873 were updated on March, 2020

Global statistics

Total sequence length163,282,969
Total ungapped length163,274,969
Gaps between scaffolds0
Number of scaffolds70
Scaffold N5032,422,566
Scaffold L502
Number of contigs72
Contig N5030,706,867
Contig L503
Total number of chromosomes and plasmids6
Number of component sequences (WGS or clone)70

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_009870275.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 2CM020868.1=NC_046679.10
Chromosome 3CM020869.1=NC_046680.10
Chromosome 4CM020870.1=NC_046681.10
Chromosome 5CM020871.1=NC_046682.10
Chromosome XCM020872.1=NC_046683.10
unplacedn/an/an/a64

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All163,266,85169163,258,85132,422,56620
Chromosome 232,422,566132,422,56632,422,56600
Chromosome 323,510,042123,510,04223,510,04200
Chromosome 430,706,867130,706,86730,706,86700
Chromosome 51,881,07011,881,0701,881,07000
Chromosome X68,158,638168,150,63868,158,63820
unplaced6,587,668646,587,668264,55600
MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MT16,118116,11816,11800