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Source database (GenBank or RefSeq) File type

mBalMus1.pri.v3

Organism name:

Balaenoptera musculus (blue whale)

Isolate:

JJ_BM4_2016_0621

Sex:

male

BioSample:

SAMN12287136

BioProject:

PRJNA554522

Submitter:

G10K

Date:

2020/10/02

Assembly type:

haploid (principal pseudohaplotype of diploid)

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_009873245.3 (latest)

RefSeq assembly accession:

GCF_009873245.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Different: chromosome MT.

Data displayed for RefSeq version

WGS Project:

VNFC03

Assembly method:

FALCON v. 1.0.2; FALCON-Unzip v. 1.0.2; purge_haplotigs v. bitbucket 7.10.2018; scaff10x v. git 4.28.2018; Bionano Solve DLS v. 3.2.1; Salsa2 HiC v. 2.0; Arrow polishing and gap filling v. 5.1.0.26412; longranger align v. 2.2.2; freebayes v. 1.2.0; gEVAL manual curation v. 2019-10-25; VGP standard assembly pipeline v. 1.5; Additional Purge_dup and Polish v. 2020-05-28

Expected final version:

Genome coverage:

51.16x

Sequencing technology:

PacBio Sequel I; Illumina NovaSeq; 10X Genomics chromium; Dovetail Genomics HiC

Linked assembly:

GCA_008658375.2 (alternate pseudohaplotype of diploid)

IDs: 8220681 [UID] 22448568 [GenBank] 22588588 [RefSeq]

See Genome Information for Balaenoptera musculus

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_009873245.3	≠	GCF_009873245.2	mBalMus1.pri.v3	Chromosome	Latest GenBank, Latest RefSeq
GCA_009873245.2	n/a	n/a	mBalMus1.v2	Chromosome	Replaced GenBank
GCA_009873245.1	n/a	n/a	mBalMus1 primary	Scaffold	Replaced GenBank

Comment

This assembly represents the principal haplotype of the diploid genome Balaenoptera musculus and includes the chromosomes. The alternate haplotype sequences are in WGS project VNFD00000000

Global statistics

Total sequence length	2,374,868,943
Total ungapped length	2,348,931,869
Gaps between scaffolds	0
Number of scaffolds	106
Scaffold N50	110,314,666
Scaffold L50	9
Number of contigs	973
Contig N50	6,315,640
Contig L50	103
Total number of chromosomes and plasmids	24
Number of component sequences (WGS or clone)	106

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM020941.2	=	NC_045785.1	0
Chromosome 2	CM020942.2	=	NC_045786.1	0
Chromosome 3	CM020943.2	=	NC_045787.1	0
Chromosome 4	CM020944.2	=	NC_045788.1	0
Chromosome 5	CM020945.2	=	NC_045789.1	0
Chromosome 6	CM020946.2	=	NC_045790.1	0
Chromosome 7	CM020947.2	=	NC_045791.1	0
Chromosome 8	CM020948.2	=	NC_045792.1	0
Chromosome 9	CM020949.2	=	NC_045793.1	0
Chromosome 10	CM020950.2	=	NC_045794.1	0
Chromosome 11	CM020951.2	=	NC_045795.1	0
Chromosome 12	CM020952.2	=	NC_045796.1	0
Chromosome 13	CM020953.2	=	NC_045797.1	0
Chromosome 14	CM020954.2	=	NC_045798.1	0
Chromosome 15	CM020955.2	=	NC_045799.1	0
Chromosome 16	CM020956.2	=	NC_045800.1	0
Chromosome 17	CM020957.2	=	NC_045801.1	0
Chromosome 18	CM020958.2	=	NC_045802.1	0
Chromosome 19	CM020959.2	=	NC_045803.1	0
Chromosome 20	CM020960.2	=	NC_045804.1	0
Chromosome 21	CM020961.2	=	NC_045805.1	0
Chromosome X	CM020962.2	=	NC_045806.1	0
Chromosome Y	CM020963.2	=	NC_045807.1	0
unplaced	n/a	n/a	n/a	82

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,374,852,541	105	2,348,915,467	110,314,666	867
Chromosome 1	184,938,300	1	183,338,213	184,938,300	49
Chromosome 2	175,897,734	1	174,664,819	175,897,734	47
Chromosome 3	171,266,408	1	170,189,500	171,266,408	50
Chromosome 4	144,968,589	1	144,413,828	144,968,589	49
Chromosome 5	140,689,829	1	140,406,466	140,689,829	31
Chromosome 6	116,510,015	1	115,098,337	116,510,015	28
Chromosome 7	113,414,938	1	112,454,719	113,414,938	29
Chromosome 8	110,314,666	1	109,896,963	110,314,666	40
Chromosome 9	107,421,550	1	106,783,753	107,421,550	30
Chromosome 10	104,744,437	1	104,423,791	104,744,437	29
Chromosome 11	104,068,540	1	103,848,266	104,068,540	13
Chromosome 12	91,445,419	1	91,141,162	91,445,419	28
Chromosome 13	90,635,089	1	90,408,117	90,635,089	21
Chromosome 14	90,457,838	1	90,204,213	90,457,838	21
Chromosome 15	88,470,553	1	88,181,064	88,470,553	21
Chromosome 16	86,152,963	1	85,853,199	86,152,963	22
Chromosome 17	81,207,215	1	80,727,532	81,207,215	24
Chromosome 18	79,663,398	1	79,445,407	79,663,398	18
Chromosome 19	60,735,208	1	60,214,793	60,735,208	15
Chromosome 20	60,304,989	1	59,414,536	60,304,989	23
Chromosome 21	36,241,783	1	35,703,641	36,241,783	14
Chromosome X	128,877,148	1	115,954,157	128,877,148	252
Chromosome Y	2,349,494	1	2,075,037	2,349,494	8
unplaced	4,076,438	82	4,073,954	51,883	5

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mBalMus1.pri.v3

See Genome Information for Balaenoptera musculus

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear