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GENO_Pfluv_1.0

Organism name:
Perca fluviatilis (European perch)
Sex:
male
BioSample:
SAMN12071746
BioProject:
PRJNA549142
Submitter:
SEX'PERCH
Date:
2020/01/30
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_010015445.1 (latest)
RefSeq assembly accession:
GCF_010015445.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
VHII01
Assembly method:
SmartDeNovo v. MAY-2017; Juicer v. 1.5.6; 3D-DNA v. 180114
Expected final version:
yes
Genome coverage:
135.0x
Sequencing technology:
Illumina HiSeq; Oxford Nanopore GridION

IDs: 5515091 [UID] 16103278 [GenBank] 25052238 [RefSeq]

See Genome Information for Perca fluviatilis

Pathogen Detection Resources

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length951,345,774
Total ungapped length951,053,044
Gaps between scaffolds0
Number of scaffolds303
Scaffold N5039,550,354
Scaffold L5011
Number of contigs1,092
Contig N504,197,643
Contig L5057
Total number of chromosomes and plasmids24
Number of component sequences (WGS or clone)303

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_010015455.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM020909.1=NC_053112.10
Chromosome 2CM020910.1=NC_053113.10
Chromosome 3CM020911.1=NC_053114.10
Chromosome 4CM020912.1=NC_053115.10
Chromosome 5CM020913.1=NC_053116.10
Chromosome 6CM020914.1=NC_053117.10
Chromosome 7CM020915.1=NC_053118.10
Chromosome 8CM020916.1=NC_053119.10
Chromosome 9CM020917.1=NC_053120.10
Chromosome 10CM020918.1=NC_053121.10
Chromosome 11CM020919.1=NC_053122.10
Chromosome 12CM020920.1=NC_053123.10
Chromosome 13CM020921.1=NC_053124.10
Chromosome 14CM020922.1=NC_053125.10
Chromosome 15CM020923.1=NC_053126.10
Chromosome 16CM020924.1=NC_053127.10
Chromosome 17CM020925.1=NC_053128.10
Chromosome 18CM020926.1=NC_053129.10
Chromosome 19CM020927.1=NC_053130.10
Chromosome 20CM020928.1=NC_053131.10
Chromosome 21CM020929.1=NC_053132.10
Chromosome 22CM020930.1=NC_053133.10
Chromosome 23CM020931.1=NC_053134.10
Chromosome 24CM020932.1=NC_053135.10
unplacedn/an/an/a279

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All951,345,774303951,053,04439,550,3547890
Chromosome 148,724,115148,713,51248,724,115300
Chromosome 248,524,041148,506,66048,524,041470
Chromosome 346,923,577146,918,51346,923,577130
Chromosome 444,863,486144,851,19244,863,486330
Chromosome 544,101,041144,083,99644,101,041490
Chromosome 643,979,800143,972,04843,979,800210
Chromosome 743,092,710143,079,52843,092,710330
Chromosome 842,187,026142,178,75642,187,026250
Chromosome 941,568,296141,554,94341,568,296360
Chromosome 1040,300,294140,289,18640,300,294280
Chromosome 1139,550,354139,543,32639,550,354190
Chromosome 1239,440,604139,428,53439,440,604340
Chromosome 1339,224,300139,212,97539,224,300310
Chromosome 1439,125,861139,106,71439,125,861480
Chromosome 1538,831,509138,818,62538,831,509300
Chromosome 1637,730,433137,721,92137,730,433260
Chromosome 1737,416,781137,400,95137,416,781410
Chromosome 1836,987,114136,976,33936,987,114260
Chromosome 1936,824,488136,815,80536,824,488250
Chromosome 2036,057,207136,045,58836,057,207310
Chromosome 2133,651,559133,643,13333,651,559270
Chromosome 2231,697,812131,683,68531,697,812370
Chromosome 2329,109,922129,102,33029,109,922210
Chromosome 2421,835,524121,826,39921,835,524230
unplaced9,597,9202799,578,385114,564550