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Source database (GenBank or RefSeq) File type

fEsoLuc1.pri

Organism name:

Esox lucius (northern pike)

Isolate:

fEsoLuc1

BioSample:

SAMN12623624

BioProject:

PRJNA561977

Submitter:

Vertebrate Genomes Project

Date:

2020/03/05

Assembly type:

haploid (principal pseudohaplotype of diploid)

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_011004845.1 (latest)

RefSeq assembly accession:

GCF_011004845.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Different: chromosome MT.

Data displayed for RefSeq version

WGS Project:

JAAIYR01

Assembly method:

FALCON DNANexus v. 1.9.0; FALCON-Unzip DNANexus v. 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.4; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 7.0.1; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2020-01-10; VGP assembly pipeline v. 1.5

Expected final version:

Genome coverage:

1.0x

Sequencing technology:

PacBio Sequel; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS

Linked assembly:

GCA_011004835.1 (alternate pseudohaplotype of diploid)

IDs: 6098511 [UID] 17355258 [GenBank] 19366798 [RefSeq]

See Genome Information for Esox lucius

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_011004845.1	≠	GCF_011004845.1	fEsoLuc1.pri	Chromosome	Latest GenBank, Latest RefSeq

Comment

This assembly represents the principal haplotype of the diploid genome Esox lucius and includes the chromosomes. The alternate haplotype sequences are in WGS project JAAIYS000000000

Global statistics

Total sequence length	918,748,614
Total ungapped length	917,725,879
Gaps between scaffolds	0
Number of scaffolds	53
Scaffold N50	37,473,588
Scaffold L50	11
Number of contigs	165
Contig N50	22,630,263
Contig L50	14
Total number of chromosomes and plasmids	26
Number of component sequences (WGS or clone)	53

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM021593.1	=	NC_047569.1	0
Chromosome 2	CM021594.1	=	NC_047570.1	0
Chromosome 3	CM021595.1	=	NC_047571.1	0
Chromosome 4	CM021596.1	=	NC_047572.1	0
Chromosome 5	CM021597.1	=	NC_047573.1	0
Chromosome 6	CM021598.1	=	NC_047574.1	0
Chromosome 7	CM021599.1	=	NC_047575.1	0
Chromosome 8	CM021600.1	=	NC_047576.1	0
Chromosome 9	CM021601.1	=	NC_047577.1	0
Chromosome 10	CM021602.1	=	NC_047578.1	0
Chromosome 11	CM021603.1	=	NC_047579.1	0
Chromosome 12	CM021604.1	=	NC_047580.1	0
Chromosome 13	CM021605.1	=	NC_047581.1	0
Chromosome 14	CM021606.1	=	NC_047582.1	0
Chromosome 15	CM021607.1	=	NC_047583.1	0
Chromosome 16	CM021608.1	=	NC_047584.1	0
Chromosome 17	CM021609.1	=	NC_047585.1	0
Chromosome 18	CM021610.1	=	NC_047586.1	0
Chromosome 19	CM021611.1	=	NC_047587.1	0
Chromosome 20	CM021612.1	=	NC_047588.1	0
Chromosome 21	CM021613.1	=	NC_047589.1	0
Chromosome 22	CM021614.1	=	NC_047590.1	0
Chromosome 23	CM021615.1	=	NC_047591.1	0
Chromosome 24	CM021616.1	=	NC_047592.1	0
Chromosome 25	CM021617.1	=	NC_047593.1	0
unplaced	n/a	n/a	n/a	27

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	918,731,919	52	917,709,184	37,473,588	112
Chromosome 1	43,167,732	1	43,167,131	43,167,732	5
Chromosome 2	39,970,751	1	39,970,751	39,970,751	0
Chromosome 3	36,486,603	1	36,417,092	36,486,603	2
Chromosome 4	34,969,986	1	34,969,486	34,969,986	4
Chromosome 5	38,248,258	1	38,246,958	38,248,258	5
Chromosome 6	31,418,460	1	31,418,160	31,418,460	2
Chromosome 7	50,849,486	1	50,849,427	50,849,486	1
Chromosome 8	38,781,828	1	38,781,603	38,781,828	3
Chromosome 9	26,064,393	1	26,063,880	26,064,393	4
Chromosome 10	30,920,508	1	30,919,895	30,920,508	5
Chromosome 11	55,408,060	1	55,401,839	55,408,060	17
Chromosome 12	37,358,143	1	37,357,643	37,358,143	4
Chromosome 13	39,760,776	1	39,759,876	39,760,776	3
Chromosome 14	37,473,588	1	37,473,388	37,473,588	1
Chromosome 15	35,391,273	1	35,391,173	35,391,273	1
Chromosome 16	34,844,506	1	34,844,306	34,844,506	1
Chromosome 17	48,487,768	1	48,487,068	48,487,768	3
Chromosome 18	28,550,130	1	28,445,050	28,550,130	1
Chromosome 19	47,534,874	1	47,534,874	47,534,874	0
Chromosome 20	45,703,413	1	45,572,783	45,703,413	8
Chromosome 21	32,541,831	1	32,305,695	32,541,831	6
Chromosome 22	25,236,946	1	25,236,746	25,236,946	2
Chromosome 23	25,372,640	1	25,372,040	25,372,640	3
Chromosome 24	29,716,333	1	29,437,383	29,716,333	14
Chromosome 25	22,595,819	1	22,409,123	22,595,819	9
unplaced	1,877,814	27	1,875,814	122,495	8

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fEsoLuc1.pri

See Genome Information for Esox lucius

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear