ASM1175060v1

Organism name:: Drosophila busckii (flies)
Infraspecific name:: Strain: San Diego stock center, stock number 13000-0081.31
Sex:: pooled male and female
BioSample:: SAMN13899428
BioProject:: PRJNA450810
Submitter:: Max Planck Institute of Immunobiology and Epigenetics
Date:: 2020/03/26
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_011750605.1 (latest)
RefSeq assembly accession:: GCF_011750605.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: DULD01
Assembly method:: SparseAssembler v. 20160205; DBG2OLC v. 20160205; HiCAssembler v. 1
Expected final version:: yes
Genome coverage:: 156x Illumina; 20x PacBio; 17x Hi-C
Sequencing technology:: Illumina; PacBio RSII; Hi-C (Illumina HiSeq)

IDs: 6460581 [UID] 18112828 [GenBank] 18166758 [RefSeq]

See Genome Information for Drosophila busckii

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_011750605.1	=	GCF_011750605.1	ASM1175060v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

This assembly was created from our PacBio data (SAMN08947966) and Hi-C data (SAMN08947965) in addition to Doris Bachtrog's Illumina data, which we used with her permission.

Global statistics

Total sequence length	118,492,362
Total ungapped length	117,352,334
Gaps between scaffolds	0
Number of scaffolds	94
Scaffold N50	22,692,164
Scaffold L50	3
Number of contigs	323
Contig N50	1,002,992
Contig L50	27
Total number of chromosomes and plasmids	6
Number of component sequences (WGS or clone)	94

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 2L	CM022245.1	=	NC_046604.1	0
Chromosome 2R	CM022246.1	=	NC_046605.1	0
Chromosome 3L	CM022247.1	=	NC_046606.1	0
Chromosome 3R	CM022248.1	=	NC_046607.1	0
Chromosome X	CM022249.1	=	NC_046608.1	0
Chromosome 4	CM022250.1	=	NC_046609.1	0
unplaced	n/a	n/a	n/a	88

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	118,492,362	94	117,352,334	22,692,164	229
Chromosome 2L	19,111,714	1	18,811,714	19,111,714	60
Chromosome 2R	24,078,396	1	23,793,396	24,078,396	57
Chromosome 3L	20,459,230	1	20,289,230	20,459,230	34
Chromosome 3R	23,496,986	1	23,381,986	23,496,986	23
Chromosome X	22,692,164	1	22,547,164	22,692,164	29
Chromosome 4	998,951	1	993,923	998,951	2
unplaced	7,654,921	88	7,534,921	199,143	24

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ASM1175060v1

See Genome Information for Drosophila busckii

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

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