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bMelUnd1.mat.Z

Organism name:
Melopsittacus undulatus (budgerigar)
Isolate:
bMelUnd1
Sex:
female
BioSample:
SAMN12623090
BioProject:
PRJNA612327
Submitter:
G10K
Date:
2020/04/13
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_012275295.1 (latest)
RefSeq assembly accession:
GCF_012275295.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAAVWG01
Assembly method:
TrioCanu v. 1.8; purge_dups v. 1.0.0; Scaff 10x v. 4.1.0; Bionano solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. smrtlink_6.0.0.47841; Longranger Align v. 2.2.2; Freebayes v. 1.3.1; gEVAL manual curation v. 2020-02-24; VGP assembly pipeline v. 1.6
Expected final version:
no
Genome coverage:
61.11x
Sequencing technology:
PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS

IDs: 6720861 [UID] 18662688 [GenBank] 19361308 [RefSeq]

See Genome Information for Melopsittacus undulatus

Pathogen Detection Resources

There are 5 assemblies for this organism

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History (Show revision history)

Comment

This assembly represents the principal haplotype of the diploid genome Melopsittacus undulatus. This is the VGP trio assembly merged haplotype data and includes the chromosomes from the female as well as the Z chromosome and the mitochondrion. The #alternate ... maternal and paternal haplotype sequences are in WGS projects JAAVWI000000000 and JAAVWH000000000 respectively.  more

Global statistics

Total sequence length1,171,617,451
Total ungapped length1,168,381,322
Gaps between scaffolds0
Number of scaffolds864
Scaffold N50104,092,594
Scaffold L505
Number of contigs1,148
Contig N5016,636,420
Contig L5019
Total number of chromosomes and plasmids32
Number of component sequences (WGS or clone)864

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_012275315.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM022632.1=NC_047527.10
Chromosome 2CM022633.1=NC_047528.12
Chromosome 3CM022634.1=NC_047529.10
Chromosome 4CM022635.1=NC_047530.11
Chromosome 5CM022636.1=NC_047531.10
Chromosome 6CM022637.1=NC_047532.10
Chromosome 7CM022638.1=NC_047533.10
Chromosome 8CM022639.1=NC_047534.10
Chromosome 9CM022640.1=NC_047535.10
Chromosome 10CM022641.1=NC_047536.10
Chromosome 11CM022642.1=NC_047537.10
Chromosome 12CM022643.1=NC_047538.10
Chromosome 13CM022644.1=NC_047539.10
Chromosome 14CM022645.1=NC_047540.10
Chromosome 15CM022646.1=NC_047541.10
Chromosome 16CM022647.1=NC_047542.10
Chromosome 17CM022648.1=NC_047543.10
Chromosome 18CM022649.1=NC_047544.10
Chromosome 19CM022650.1=NC_047545.10
Chromosome 20CM022651.1=NC_047546.11
Chromosome 21CM022652.1=NC_047547.10
Chromosome 22CM022653.1=NC_047548.10
Chromosome 23CM022654.1=NC_047549.10
Chromosome 24CM022655.1=NC_047550.11
Chromosome 25CM022656.1=NC_047551.12
Chromosome 26CM022657.1=NC_047552.11
Chromosome 27CM022658.1=NC_047553.10
Chromosome 28CM022659.1=NC_047554.12
Chromosome 29CM022660.1=NC_047555.11
Chromosome 30CM022661.1=NC_047556.10
Chromosome ZCM022662.1=NC_047557.10
Chromosome WCM022663.1=NC_047558.110
unplacedn/an/an/a811

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule1,171,617,4518641,168,381,322104,092,5942840
Chromosome 1Assembled molecule155,071,7061154,855,711155,071,706150
Chromosome 2AllAssembled moleculeUnlocalized scaffolds121,458,218121,023,092435,126312121,070,716120,636,690434,026121,023,092121,023,092272,14726233000
Chromosome 3Assembled molecule118,160,7501118,149,891118,160,750130
Chromosome 4AllAssembled moleculeUnlocalized scaffolds112,839,417112,750,33889,079211111,678,870111,589,79189,079112,750,338112,750,33889,07913130000
Chromosome 5Assembled molecule87,083,378186,965,02487,083,37890
Chromosome 6Assembled molecule86,477,950186,176,89386,477,950210
Chromosome 7Assembled molecule73,268,660173,132,88773,268,660260
Chromosome 8Assembled molecule57,497,735157,468,04757,497,73550
Chromosome 9Assembled molecule45,297,783145,288,28645,297,783100
Chromosome 10Assembled molecule35,277,360135,276,26035,277,36050
Chromosome 11Assembled molecule24,154,513124,153,81324,154,51330
Chromosome 12Assembled molecule23,105,471123,105,47123,105,47100
Chromosome 13Assembled molecule12,147,643112,147,07812,147,64390
Chromosome 14Assembled molecule6,967,09816,966,6856,967,09830
Chromosome 15Assembled molecule6,662,06816,661,8686,662,06820
Chromosome 16Assembled molecule6,113,79416,113,2946,113,79440
Chromosome 17Assembled molecule5,218,18315,217,7835,218,18320
Chromosome 18Assembled molecule5,029,92115,029,1215,029,92130
Chromosome 19Assembled molecule4,922,88014,820,4954,922,88020
Chromosome 20AllAssembled moleculeUnlocalized scaffolds2,660,6922,055,740604,9522112,660,1922,055,240604,9522,055,7402,055,740604,952110000
Chromosome 21Assembled molecule2,555,00512,508,2642,555,00510
Chromosome 22Assembled molecule1,817,76811,816,7681,817,76860
Chromosome 23Assembled molecule1,430,27611,429,5761,430,27630
Chromosome 24AllAssembled moleculeUnlocalized scaffolds1,112,1751,018,39093,7852111,110,7751,017,49093,2851,018,3901,018,39093,785651000
Chromosome 25AllAssembled moleculeUnlocalized scaffolds973,230425,885547,345312972,830425,785547,045402,532425,885402,532413000
Chromosome 26AllAssembled moleculeUnlocalized scaffolds964,445867,40297,043211963,318866,77596,543867,402867,40297,043431000
Chromosome 27Assembled molecule936,8041935,904936,80450
Chromosome 28AllAssembled moleculeUnlocalized scaffolds742,358352,337390,021312741,258352,237389,021290,073352,337290,073312000
Chromosome 29AllAssembled moleculeUnlocalized scaffolds658,172368,675289,497211657,672368,675288,997368,675368,675289,497101000
Chromosome 30Assembled molecule613,7721613,772613,77200
Chromosome ZAssembled molecule104,092,5941103,954,095104,092,594290
Chromosome WAllAssembled moleculeUnlocalized scaffolds19,867,8474,022,34715,845,5001111019,716,0333,882,28215,833,7513,027,5134,022,3472,219,8331028000
unplacedAssembled molecule46,437,78581146,022,67282,079400