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Tufts_HGry_1.1

Organism name:
Halichoerus grypus (gray seal)
Infraspecific name:
Ecotype: Northwest Atlantic
Isolate:
241Hg
Sex:
male
BioSample:
SAMN13022322
BioProject:
PRJNA577240
Submitter:
Cummings School of Veterinary Medicine at Tufts University
Date:
2020/04/15
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_012393455.1 (latest)
RefSeq assembly accession:
GCF_012393455.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAAXOB01
Assembly method:
MaSuRCA v. 3.3.0
Expected final version:
no
Genome coverage:
39.0x
Sequencing technology:
Illumina NextSeq; Oxford Nanopore MinION

IDs: 6787851 [UID] 18815798 [GenBank] 21968318 [RefSeq]

See Genome Information for Halichoerus grypus

History (Show revision history)

Comment

Global statistics

Total sequence length2,338,243,510
Total ungapped length2,338,231,810
Gaps between scaffolds0
Number of scaffolds6,880
Scaffold N501,033,864
Scaffold L50637
Number of contigs6,997
Contig N501,011,981
Contig L50652
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)6,880

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,338,243,5106,8802,338,231,8101,033,8641170