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BPBGC_Mater_1.1

Organism name:
Molothrus ater (birds)
Infraspecific name:
Breed: brown headed cowbird
Isolate:
BHLD 08-10-18
Sex:
female
BioSample:
SAMN14074414
BioProject:
PRJNA606972
Submitter:
Brood Parasitic Bird Genomes Consortium
Date:
2022/10/11
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_012460135.3 (latest)
RefSeq assembly accession:
GCF_012460135.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAAQZI01
Assembly method:
Canu v. OCT-2019
Expected final version:
no
Genome coverage:
200.0x
Sequencing technology:
PacBio Sequel II

IDs: 16157821 [UID] 41435438 [GenBank] 41609668 [RefSeq]

See Genome Information for Molothrus ater

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

The scaffolds and chromosomes for this genome were updated on October 2022. There was no change to the contigs.

Global statistics

Total sequence length1,087,236,743
Total ungapped length1,087,173,343
Gaps between scaffolds0
Number of scaffolds374
Scaffold N5070,107,701
Scaffold L506
Number of contigs692
Contig N5013,273,966
Contig L5025
Total number of chromosomes and plasmids42
Number of component sequences (WGS or clone)692

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_012460155.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM022840.2=NC_050478.20
Chromosome 2CM022841.2=NC_050479.20
Chromosome 3CM022842.2=NC_050480.20
Chromosome 4CM022843.2=NC_050481.20
Chromosome 5CM022844.2=NC_050482.20
Chromosome 6CM022845.2=NC_050483.20
Chromosome 7CM022846.2=NC_050484.20
Chromosome 8CM022847.2=NC_050485.20
Chromosome 9CM022848.2=NC_050486.20
Chromosome 10CM022849.2=NC_050487.20
Chromosome 11CM022850.2=NC_050488.20
Chromosome 12CM022851.2=NC_050489.20
Chromosome 13CM022852.2=NC_050490.20
Chromosome 14CM022853.2=NC_050491.20
Chromosome 15CM022854.2=NC_050492.20
Chromosome 16CM022855.2=NC_050493.20
Chromosome 17CM022856.2=NC_050494.20
Chromosome 18CM022857.2=NC_050495.20
Chromosome 19CM022858.2=NC_050496.20
Chromosome 20CM022859.2=NC_050497.20
Chromosome 21CM022860.2=NC_050498.20
Chromosome 22CM022861.2=NC_050499.20
Chromosome 23CM022862.2=NC_050500.20
Chromosome 24CM022863.2=NC_050501.20
Chromosome 25CM022864.2=NC_050502.20
Chromosome 26CM022865.2=NC_050503.20
Chromosome 27CM022866.2=NC_050504.20
Chromosome 28CM022867.2=NC_050505.20
Chromosome 29CM022868.2=NC_050506.20
Chromosome 30CM022869.2=NC_050507.20
Chromosome 31CM046314.1=NC_071658.10
Chromosome 32CM046315.1=NC_071659.10
Chromosome 33CM046316.1=NC_071660.10
Chromosome 34CM046317.1=NC_071661.10
Chromosome 35CM046318.1=NC_071662.10
Chromosome 36CM046319.1=NC_071663.10
Chromosome 37CM046320.1=NC_071664.10
Chromosome 38CM046321.1=NC_071665.10
Chromosome 39CM046322.1=NC_071666.10
Chromosome WCM022870.2=NC_050510.21
Chromosome ZCM022871.2=NC_050511.22
unplacedn/an/an/a329

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule1,087,219,9853731,087,156,58570,107,7013180
Chromosome 1Assembled molecule153,576,2661153,573,966153,576,266230
Chromosome 2Assembled molecule116,479,5501116,478,050116,479,550150
Chromosome 3Assembled molecule112,350,1621112,348,362112,350,162180
Chromosome 4Assembled molecule72,966,734172,964,93472,966,734180
Chromosome 5Assembled molecule72,932,422172,931,82272,932,42260
Chromosome 6Assembled molecule63,027,177163,026,77763,027,17740
Chromosome 7Assembled molecule38,324,123138,323,92338,324,12320
Chromosome 8Assembled molecule36,093,512136,092,41236,093,512110
Chromosome 9Assembled molecule31,482,288131,481,28831,482,288100
Chromosome 10Assembled molecule25,889,776125,889,37625,889,77640
Chromosome 11Assembled molecule21,394,286121,393,38621,394,28690
Chromosome 12Assembled molecule21,388,261121,387,56121,388,26170
Chromosome 13Assembled molecule20,622,287120,621,98720,622,28730
Chromosome 14Assembled molecule20,237,951120,236,95120,237,951100
Chromosome 15Assembled molecule18,665,309118,664,80918,665,30950
Chromosome 16Assembled molecule16,598,772116,598,47216,598,77230
Chromosome 17Assembled molecule15,353,315115,353,11515,353,31520
Chromosome 18Assembled molecule14,447,869114,447,36914,447,86950
Chromosome 19Assembled molecule13,116,671113,115,67113,116,671100
Chromosome 20Assembled molecule11,706,890111,706,69011,706,89020
Chromosome 21Assembled molecule11,540,415111,539,81511,540,41560
Chromosome 22Assembled molecule8,405,79218,404,5928,405,792120
Chromosome 23Assembled molecule8,225,41618,224,8168,225,41660
Chromosome 24Assembled molecule7,348,72317,348,3237,348,72340
Chromosome 25Assembled molecule7,180,66117,180,3617,180,66130
Chromosome 26Assembled molecule6,086,66416,086,1646,086,66450
Chromosome 27Assembled molecule5,983,31915,983,0195,983,31930
Chromosome 28Assembled molecule5,413,33415,412,6345,413,33470
Chromosome 29Assembled molecule3,565,26913,564,7693,565,26950
Chromosome 30Assembled molecule3,047,97413,047,3743,047,97460
Chromosome 31Assembled molecule1,772,46911,769,4691,772,46960
Chromosome 32Assembled molecule1,627,68411,626,6841,627,68420
Chromosome 33Assembled molecule1,332,51611,332,1161,332,51640
Chromosome 34Assembled molecule1,293,22111,291,7211,293,22130
Chromosome 35Assembled molecule1,276,52611,273,0261,276,52670
Chromosome 36Assembled molecule955,0671951,567955,06770
Chromosome 37Assembled molecule686,1501683,650686,15050
Chromosome 38Assembled molecule536,7901536,290536,79010
Chromosome 39Assembled molecule536,1711533,171536,17160
Chromosome WAllAssembled moleculeUnlocalized scaffolds12,454,04511,773,180680,86521112,453,94511,773,080680,86511,773,18011,773,180680,865110000
Chromosome ZAllAssembled moleculeUnlocalized scaffolds76,204,39970,107,7016,096,69831276,203,39970,106,8016,096,59870,107,70170,107,7014,984,4051091000
unplacedAssembled molecule25,093,75932925,072,759116,557420
MoleculeTotal
Length
Mitochondrion MT16,758