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Source database (GenBank or RefSeq) File type

MFA1912RKSv2

Organism name:

Macaca fascicularis (crab-eating macaque)

Isolate:

CE1976F

BioSample:

SAMD00204697

BioProject:

PRJDB9269

Submitter:

Keio University / RIKEN

Date:

2021/10/26

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_012559485.3 (latest)

RefSeq assembly accession:

GCF_012559485.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

BLPH02

Assembly method:

wtdbg v. 2.3; 3d-dna v. 20180929; nextPolish v. 1.3.1

Genome coverage:

201x

Sequencing technology:

PacBio sequel; Illumina HiSeq X; MGI-seq 2000

IDs: 11455131 [UID] 30152968 [GenBank] 30234828 [RefSeq]

See Genome Information for Macaca fascicularis

Pathogen Detection Resources

There are 13 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_012559485.3	≠	GCF_012559485.2	MFA1912RKSv2	Chromosome	Latest GenBank, Latest RefSeq
GCA_012559485.2	n/a	n/a	MFA1912RKS	Chromosome	Replaced GenBank
GCA_012559485.1	n/a	n/a	MFA1912RKS	Scaffold	Replaced GenBank

Comment

Global statistics

Total sequence length	2,800,899,072
Total ungapped length	2,800,597,233
Gaps between scaffolds	0
Number of scaffolds	401
Scaffold N50	149,803,873
Scaffold L50	8
Number of contigs	1,006
Contig N50	26,251,577
Contig L50	31
Total number of chromosomes and plasmids	22
Number of component sequences (WGS or clone)	401

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	BLPH02000001.1	=	NC_052255.1	0
Chromosome 2	BLPH02000002.1	=	NC_052256.1	0
Chromosome 3	BLPH02000003.1	=	NC_052257.1	0
Chromosome 4	BLPH02000004.1	=	NC_052258.1	0
Chromosome 5	BLPH02000005.1	=	NC_052259.1	0
Chromosome 6	BLPH02000006.1	=	NC_052260.1	0
Chromosome 7	BLPH02000007.1	=	NC_052261.1	0
Chromosome 8	BLPH02000008.1	=	NC_052262.1	0
Chromosome 9	BLPH02000009.1	=	NC_052263.1	0
Chromosome 10	BLPH02000010.1	=	NC_052264.1	0
Chromosome 11	BLPH02000011.1	=	NC_052265.1	0
Chromosome 12	BLPH02000012.1	=	NC_052266.1	0
Chromosome 13	BLPH02000013.1	=	NC_052267.1	0
Chromosome 14	BLPH02000014.1	=	NC_052268.1	0
Chromosome 15	BLPH02000015.1	=	NC_052269.1	0
Chromosome 16	BLPH02000016.1	=	NC_052270.1	0
Chromosome 17	BLPH02000017.1	=	NC_052271.1	0
Chromosome 18	BLPH02000018.1	=	NC_052272.1	0
Chromosome 19	BLPH02000019.1	=	NC_052273.1	0
Chromosome 20	BLPH02000020.1	=	NC_052274.1	0
Chromosome X	BLPH02000021.1	=	NC_052275.1	0
unplaced	n/a	n/a	n/a	379

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,800,882,497	400	2,800,580,658	149,803,873	605
Chromosome 1	221,970,631	1	221,952,135	221,970,631	37
Chromosome 2	193,987,804	1	193,978,306	193,987,804	19
Chromosome 3	184,905,226	1	184,861,679	184,905,226	88
Chromosome 4	167,980,602	1	167,958,121	167,980,602	45
Chromosome 5	185,896,635	1	185,889,141	185,896,635	15
Chromosome 6	176,599,330	1	176,593,842	176,599,330	11
Chromosome 7	166,634,510	1	166,608,539	166,634,510	52
Chromosome 8	142,847,455	1	142,830,473	142,847,455	34
Chromosome 9	129,235,353	1	129,213,388	129,235,353	44
Chromosome 10	95,991,616	1	95,961,626	95,991,616	60
Chromosome 11	130,228,713	1	130,224,215	130,228,713	9
Chromosome 12	127,712,166	1	127,709,666	127,712,166	5
Chromosome 13	106,988,864	1	106,984,365	106,988,864	9
Chromosome 14	125,498,623	1	125,491,125	125,498,623	15
Chromosome 15	109,914,925	1	109,909,425	109,914,925	11
Chromosome 16	77,312,005	1	77,299,021	77,312,005	26
Chromosome 17	93,574,148	1	93,570,151	93,574,148	8
Chromosome 18	72,866,064	1	72,864,576	72,866,064	3
Chromosome 19	55,294,057	1	55,267,575	55,294,057	53
Chromosome 20	76,902,342	1	76,894,350	76,902,342	16
Chromosome X	149,803,873	1	149,785,883	149,803,873	36
unplaced	8,737,555	379	8,733,056	25,058	9

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MFA1912RKSv2

See Genome Information for Macaca fascicularis

Pathogen Detection Resources

There are 13 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear