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Source database (GenBank or RefSeq) File type

Mhudiblu_PPA_v0

This assembly has been replaced. See current version

Organism name:

Pan paniscus (pygmy chimpanzee)

Isolate:

Mhudiblu (Carbone #601152)

Sex:

female

BioSample:

SAMN11123633

BioProject:

PRJNA526933

Submitter:

University of Washington, University of Bari, Italy

Date:

2020/05/15

Assembly level:

Chromosome

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_013052645.1 (replaced)

RefSeq assembly accession:

GCF_013052645.1 (suppressed) see latest RefSeq assembly for this species

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for GenBank version

WGS Project:

SSBP01

Assembly method:

Falcon v. (Git id 53444482 dgordon branch available on 2017.06.13)

Expected final version:

Sequencing technology:

PacBio RSII; Illumina

IDs: 7133581 [UID] 19606358 [GenBank] 19638978 [RefSeq]

See Genome Information for Pan paniscus

Pathogen Detection Resources

There are 8 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_013052645.3	n/a	n/a	Mhudiblu_PPA_v2	Chromosome	Latest GenBank
GCA_013052645.2	n/a	n/a	Mhudiblu_PPA_v1	Chromosome	Replaced GenBank
GCA_013052645.1	≠	GCF_013052645.1	Mhudiblu_PPA_v0	Chromosome	Replaced GenBank, RefSeq suppressed

Comment

Global statistics

Total sequence length	3,051,884,774
Total ungapped length	3,015,333,734
Gaps between scaffolds	64
Number of scaffolds	4,356
Scaffold N50	68,246,502
Scaffold L50	16
Number of contigs	4,975
Contig N50	16,579,680
Contig L50	48
Total number of chromosomes and plasmids	24
Number of component sequences (WGS or clone)	4,975

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM023027.1	=	NC_048239.1	0
Chromosome 2A	CM023028.1	=	NC_048240.1	0
Chromosome 2B	CM023029.1	=	NC_048241.1	0
Chromosome 3	CM023030.1	=	NC_048242.1	0
Chromosome 4	CM023031.1	=	NC_048243.1	0
Chromosome 5	CM023032.1	=	NC_048244.1	0
Chromosome 6	CM023033.1	=	NC_048245.1	0
Chromosome 7	CM023034.1	=	NC_048246.1	0
Chromosome 8	CM023035.1	=	NC_048247.1	0
Chromosome 9	CM023036.1	=	NC_048248.1	0
Chromosome 10	CM023037.1	=	NC_048249.1	0
Chromosome 11	CM023038.1	=	NC_048250.1	0
Chromosome 12	CM023039.1	=	NC_048251.1	0
Chromosome 13	CM023040.1	=	NC_048252.1	0
Chromosome 14	CM023041.1	=	NC_048253.1	0
Chromosome 15	CM023042.1	=	NC_048254.1	0
Chromosome 16	CM023043.1	=	NC_048255.1	0
Chromosome 17	CM023044.1	=	NC_048256.1	0
Chromosome 18	CM023045.1	=	NC_048257.1	0
Chromosome 19	CM023046.1	=	NC_048258.1	0
Chromosome 20	CM023047.1	=	NC_048259.1	0
Chromosome 21	CM023048.1	=	NC_048260.1	0
Chromosome 22	CM023049.1	=	NC_048261.1	0
Chromosome X	CM023050.1	=	NC_048262.1	0
unplaced	n/a	n/a	n/a	4,268

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	3,051,884,774	4,356	3,015,333,734	68,246,502	619	64
Chromosome 1	224,621,958	5	220,997,261	70,689,685	51	4
Chromosome 2A	104,947,789	4	103,786,099	87,981,191	28	3
Chromosome 2B	129,381,034	1	128,295,569	129,381,034	14	0
Chromosome 3	195,577,393	4	195,047,306	75,898,699	21	3
Chromosome 4	182,437,434	3	181,719,665	110,128,588	18	2
Chromosome 5	176,502,593	2	175,897,314	158,698,778	34	1
Chromosome 6	168,932,342	5	167,194,355	106,299,193	25	4
Chromosome 7	150,536,359	7	148,119,694	40,351,324	45	6
Chromosome 8	141,842,281	3	140,480,805	130,833,539	16	2
Chromosome 9	109,767,803	3	109,102,898	38,513,894	16	2
Chromosome 10	128,853,861	3	127,403,410	82,081,466	27	2
Chromosome 11	129,867,894	5	128,778,196	79,737,938	18	4
Chromosome 12	131,319,602	3	130,620,582	78,339,950	23	2
Chromosome 13	95,736,914	3	95,347,524	67,292,150	5	2
Chromosome 14	87,894,197	2	87,229,111	86,960,602	10	1
Chromosome 15	80,799,215	4	77,887,030	50,988,169	23	3
Chromosome 16	71,000,456	3	68,862,913	45,941,266	37	2
Chromosome 17	77,747,126	6	76,408,544	43,085,344	29	5
Chromosome 18	74,093,087	1	73,811,721	74,093,087	7	0
Chromosome 19	55,604,062	6	54,161,911	17,447,110	28	5
Chromosome 20	59,769,695	5	59,326,525	32,257,530	11	4
Chromosome 21	33,144,400	1	32,979,067	33,144,400	4	0
Chromosome 22	31,064,846	4	30,827,669	22,282,315	19	3
Chromosome X	146,233,785	5	142,690,712	41,265,475	44	4
unplaced	264,208,648	4,268	258,357,853	114,730	66	0

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Mhudiblu_PPA_v0

See Genome Information for Pan paniscus

Pathogen Detection Resources

There are 8 assemblies for this organism

History (Show revision history)

Comment

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