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ASM1331723v1

Organism name:
Leisingera sp. ANG59 (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ANG59
BioSample:
SAMN13291773
BioProject:
PRJNA589827
Submitter:
University of Connecticut
Date:
2020/06/10
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_013317235.1 (latest)
RefSeq assembly accession:
GCF_013317235.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
WLCM01
Assembly method:
A5 v. JUN-2017
Expected final version:
yes
Genome coverage:
0.2x
Sequencing technology:
Illumina MiSeq

IDs: 7257681 [UID] 19998138 [GenBank] 20065978 [RefSeq]

See Genome Information for Leisingera sp. ANG59

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Spencer Nyholm, University of Connecticut

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/18/2019 16:48:23
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.10
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,234
CDSs (total)::5,173
Genes (coding)::5,010
CDSs (with protein)::5,010
Genes (RNA)::61
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::55
ncRNAs::3
Pseudo Genes (total)::163
CDSs (without protein)::163
Pseudo Genes (ambiguous residues)::0 of 163
Pseudo Genes (frameshifted)::40 of 163
Pseudo Genes (incomplete)::122 of 163
Pseudo Genes (internal stop)::23 of 163
Pseudo Genes (multiple problems)::20 of 163
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,331,509
Total ungapped length5,331,509
Number of contigs108
Contig N50121,837
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)108

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,331,5091085,331,509121,83700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Leisingera sp. ANG59Leisingera sp. ANG59

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000473325.1Leisingera caeruleatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.1662.0961.95

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna