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Source database (GenBank or RefSeq) File type

BIME_Rmic_1.3

Organism name:

Rhipicephalus microplus (southern cattle tick)

Isolate:

Rmic-2018

BioSample:

SAMN14941061

BioProject:

PRJNA633311

Submitter:

TIGMIC Group

Date:

2020/06/16

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_013339725.1 (latest)

RefSeq assembly accession:

GCF_013339725.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Different: chromosome MT.

Data displayed for RefSeq version

WGS Project:

JABSTU01

Assembly method:

SOAPdenovo v. 1.0; FALCON v. 1.0; Canu v. 1.7; Wtdbg v. 1.1.006; Quickmerge v. unknown

Expected final version:

yes

Genome coverage:

67x

Sequencing technology:

PacBio Sequel

IDs: 7283021 [UID] 20083008 [GenBank] 22929088 [RefSeq]

See Genome Information for Rhipicephalus microplus

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_013339725.1	≠	GCF_013339725.1	BIME_Rmic_1.3	Chromosome	Latest GenBank, Latest RefSeq

Comment

Annotation was added to the contigs in November 2021.

Global statistics

Total sequence length	2,529,930,304
Total ungapped length	2,529,772,300
Gaps between scaffolds	0
Number of scaffolds	7,048
Scaffold N50	183,350,851
Scaffold L50	6
Number of contigs	8,624
Contig N50	1,791,079
Contig L50	334
Total number of chromosomes and plasmids	12
Number of component sequences (WGS or clone)	7,048

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM023459.1	=	NC_051165.1	0
Chromosome 2	CM023460.1	=	NC_051166.1	0
Chromosome 3	CM023461.1	=	NC_051167.1	0
Chromosome 4	CM023462.1	=	NC_051168.1	0
Chromosome 5	CM023463.1	=	NC_051169.1	0
Chromosome 6	CM023464.1	=	NC_051170.1	0
Chromosome 7	CM023465.1	=	NC_051171.1	0
Chromosome 8	CM023466.1	=	NC_051172.1	0
Chromosome 9	CM023467.1	=	NC_051173.1	0
Chromosome 10	CM023468.1	=	NC_051174.1	0
Chromosome 11	CM023469.1	=	NC_051175.1	0
unplaced	n/a	n/a	n/a	7,036

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,529,915,399	7,047	2,529,757,395	183,350,851	1,576
Chromosome 1	325,144,201	1	325,128,701	325,144,201	155
Chromosome 2	202,141,382	1	202,121,182	202,141,382	202
Chromosome 3	238,537,928	1	238,520,126	238,537,928	176
Chromosome 4	218,457,896	1	218,438,696	218,457,896	192
Chromosome 5	206,569,738	1	206,556,138	206,569,738	136
Chromosome 6	183,350,851	1	183,340,651	183,350,851	102
Chromosome 7	175,432,524	1	175,420,824	175,432,524	117
Chromosome 8	170,387,423	1	170,372,223	170,387,423	152
Chromosome 9	155,099,419	1	155,088,019	155,099,419	114
Chromosome 10	139,434,689	1	139,421,689	139,434,689	130
Chromosome 11	126,224,405	1	126,214,605	126,224,405	98
unplaced	389,134,943	7,036	389,134,541	70,164	2

Assembly

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BIME_Rmic_1.3

See Genome Information for Rhipicephalus microplus

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear