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Source database (GenBank or RefSeq) File type

SCU_Mint_v3

Organism name:

Macadamia integrifolia (macadamia nut)

Infraspecific name:

Cultivar: HAES 741

BioSample:

SAMN13508564

BioProject:

PRJNA593881

Submitter:

Southern Cross University

Date:

2020/06/23

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_013358625.1 (latest)

RefSeq assembly accession:

GCF_013358625.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome Pltd

Data displayed for RefSeq version

WGS Project:

JAAEEG01

Assembly method:

MaSuRCA v. 3.2.6; ALLMAPS v. Jul-2019

Expected final version:

Genome coverage:

133.6x

Sequencing technology:

PacBio; Illumina HiSeq

IDs: 7293101 [UID] 20129568 [GenBank] 27926208 [RefSeq]

See Genome Information for Macadamia integrifolia

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_013358625.1	≠	GCF_013358625.1	SCU_Mint_v3	Chromosome	Latest GenBank, Latest RefSeq

Comment

This third assembly replaces the previous assemblies submitted with accession UZVR00000000 (version 2) and FLKO00000000 (version 1).

Global statistics

Total sequence length	744,937,181
Total ungapped length	733,768,616
Gaps between scaffolds	0
Number of scaffolds	2,644
Scaffold N50	34,167,173
Scaffold L50	10
Number of contigs	23,449
Contig N50	60,666
Contig L50	3,404
Total number of chromosomes and plasmids	15
Number of component sequences (WGS or clone)	2,644

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM023665.1	=	NC_056557.1	0
Chromosome 2	CM023666.1	=	NC_056558.1	0
Chromosome 3	CM023667.1	=	NC_056559.1	0
Chromosome 4	CM023668.1	=	NC_056560.1	0
Chromosome 5	CM023669.1	=	NC_056561.1	0
Chromosome 6	CM023670.1	=	NC_056562.1	0
Chromosome 7	CM023671.1	=	NC_056563.1	0
Chromosome 8	CM023672.1	=	NC_056564.1	0
Chromosome 9	CM023673.1	=	NC_056565.1	0
Chromosome 10	CM023674.1	=	NC_056566.1	0
Chromosome 11	CM023675.1	=	NC_056567.1	0
Chromosome 12	CM023676.1	=	NC_056568.1	0
Chromosome 13	CM023677.1	=	NC_056569.1	0
Chromosome 14	CM023678.1	=	NC_056570.1	0
unplaced	n/a	n/a	n/a	2,629

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	744,777,467	2,643	733,608,902	34,167,173	20,805
Chromosome 1	36,399,236	1	35,698,648	36,399,236	1,126
Chromosome 2	44,010,915	1	43,332,180	44,010,915	1,425
Chromosome 3	37,831,390	1	37,317,030	37,831,390	1,179
Chromosome 4	37,507,012	1	37,088,612	37,507,012	1,129
Chromosome 5	46,991,412	1	46,362,454	46,991,412	1,497
Chromosome 6	40,841,931	1	40,269,924	40,841,931	1,215
Chromosome 7	36,789,931	1	36,245,561	36,789,931	1,203
Chromosome 8	34,869,494	1	34,458,874	34,869,494	1,083
Chromosome 9	42,247,492	1	41,623,940	42,247,492	1,219
Chromosome 10	34,167,173	1	33,727,171	34,167,173	924
Chromosome 11	33,967,801	1	33,485,761	33,967,801	987
Chromosome 12	31,654,987	1	31,221,305	31,654,987	936
Chromosome 13	29,219,948	1	28,711,112	29,219,948	931
Chromosome 14	32,845,142	1	32,431,994	32,845,142	976
unplaced	225,433,603	2,629	221,634,336	216,812	4,975

Assembly

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SCU_Mint_v3

See Genome Information for Macadamia integrifolia

Pathogen Detection Resources

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear