Amil_v2.1

Organism name:: Acropora millepora (stony corals)
Isolate:: JS-1
BioSample:: SAMN14973899
BioProject:: PRJNA633778
Submitter:: Columbia
Date:: 2020/07/29
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_013753865.1 (latest)
RefSeq assembly accession:: GCF_013753865.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: JACAWQ01
Assembly method:: FALCON v. AUG-2019
Expected final version:: yes
Genome coverage:: 85.0x
Sequencing technology:: PacBio

IDs: 7669641 [UID] 21092708 [GenBank] 29153348 [RefSeq]

See Genome Information for Acropora millepora

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_013753865.1	=	GCF_013753865.1	Amil_v2.1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	475,381,253
Total ungapped length	475,342,477
Gaps between scaffolds	0
Number of scaffolds	854
Scaffold N50	19,840,543
Scaffold L50	9
Number of contigs	1,251
Contig N50	1,091,365
Contig L50	129
Total number of chromosomes and plasmids	14
Number of component sequences (WGS or clone)	854

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM024249.1	=	NC_058066.1	0
Chromosome 2	CM024250.1	=	NC_058067.1	0
Chromosome 3	CM024251.1	=	NC_058068.1	0
Chromosome 4	CM024252.1	=	NC_058069.1	0
Chromosome 5	CM024253.1	=	NC_058070.1	0
Chromosome 6	CM024254.1	=	NC_058071.1	0
Chromosome 7	CM024255.1	=	NC_058072.1	0
Chromosome 8	CM024256.1	=	NC_058073.1	0
Chromosome 9	CM024257.1	=	NC_058074.1	0
Chromosome 10	CM024258.1	=	NC_058075.1	0
Chromosome 11	CM024259.1	=	NC_058076.1	0
Chromosome 12	CM024260.1	=	NC_058077.1	0
Chromosome 13	CM024261.1	=	NC_058078.1	0
Chromosome 14	CM024262.1	=	NC_058079.1	0
unplaced	n/a	n/a	n/a	840

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	475,381,253	854	475,342,477	19,840,543	397
Chromosome 1	39,361,238	1	39,357,355	39,361,238	42
Chromosome 2	37,394,699	1	37,390,799	37,394,699	39
Chromosome 3	19,500,522	1	19,497,272	19,500,522	32
Chromosome 4	29,333,776	1	29,331,044	29,333,776	28
Chromosome 5	31,085,176	1	31,082,842	31,085,176	25
Chromosome 6	19,840,543	1	19,838,033	19,840,543	26
Chromosome 7	24,214,911	1	24,212,501	24,214,911	25
Chromosome 8	17,823,322	1	17,821,822	17,823,322	15
Chromosome 9	19,706,214	1	19,703,304	19,706,214	30
Chromosome 10	21,761,158	1	21,758,832	21,761,158	22
Chromosome 11	16,847,141	1	16,845,441	16,847,141	17
Chromosome 12	23,333,569	1	23,330,769	23,333,569	28
Chromosome 13	22,340,849	1	22,338,762	22,340,849	22
Chromosome 14	17,421,010	1	17,419,065	17,421,010	18
unplaced	135,417,125	840	135,414,636	501,102	28

Assembly

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Amil_v2.1

See Genome Information for Acropora millepora

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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