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BU_Bcop_v1

Organism name:
Bradysia coprophila (flies)
Infraspecific name:
Strain: Holo2
Sex:
male
BioSample:
SAMN12533751
BioProject:
PRJNA291918
Submitter:
Brown University
Date:
2020/09/11
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_014529535.1 (replaced)
RefSeq assembly accession:
GCF_014529535.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: 1 unlocalized scaffold on chromosome MT
  • Data displayed for RefSeq version
WGS Project:
VSDI01
Assembly method:
Canu v. 1.3
Expected final version:
no
Genome coverage:
50.0x
Sequencing technology:
PacBio RSII; Oxford Nanopore MinION; Illumina HiSeq; BioNano Genomics Irys

IDs: 8061491 [UID] 22055608 [GenBank] 22588658 [RefSeq]

See Genome Information for Bradysia coprophila

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length309,728,657
Total ungapped length301,939,066
Gaps between scaffolds0
Number of scaffolds742
Scaffold N506,790,317
Scaffold L5014
Number of contigs898
Contig N502,330,419
Contig L5031
Total number of chromosomes and plasmids4
Number of component sequences (WGS or clone)742

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_014529545.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome IICM025453.1=NC_050735.10
Chromosome IIICM025454.1=NC_050736.10
Chromosome XCM025456.1=NC_050737.183
Chromosome IVCM025455.1=NC_050738.15
unplacedn/an/an/a650

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule309,728,657742301,939,0666,790,3171560
Chromosome IIAssembled molecule13,097,784113,077,28913,097,78410
Chromosome IIIAssembled molecule5,428,25415,427,7545,428,25410
Chromosome XAllAssembled moleculeUnlocalized scaffolds71,568,6739,680,41361,888,2608418367,849,4669,272,88258,576,5845,951,9249,680,4135,404,297881573000
Chromosome IVAllAssembled moleculeUnlocalized scaffolds46,413,43815,234,92331,178,51561545,721,14515,110,26830,610,8779,317,16715,234,9236,790,31717512000
unplacedAssembled molecule173,220,508650169,863,4126,907,510490