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YNU_ManJav_2.0

Organism name:
Manis javanica (Malayan pangolin)
Isolate:
MJ74
Sex:
female
BioSample:
SAMN11464811
BioProject:
PRJNA529512
Submitter:
Yunnan University
Date:
2020/09/15
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_014570535.1 (latest)
RefSeq assembly accession:
GCF_014570535.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
VALM01
Assembly method:
AllPaths v. April-2015; Supernova v. 1.2
Expected final version:
yes
Genome coverage:
411.8x
Sequencing technology:
Illumina HiSeq; 10X genomic

IDs: 8086121 [UID] 22109428 [GenBank] 22417508 [RefSeq]

See Genome Information for Manis javanica

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,438,977,774
Total ungapped length2,238,257,586
Gaps between scaffolds0
Number of scaffolds17,969
Scaffold N5013,854,118
Scaffold L5054
Number of contigs68,553
Contig N5083,964
Contig L507,689
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)17,969

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,438,961,19817,9682,238,241,01013,854,11850,5840
MoleculeTotal
Length
Mitochondrion MT16,576