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ASM1464391v1

Organism name:
Oceanisphaera marina (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CGMCC 1.15923
BioSample:
SAMD00245096
BioProject:
PRJDB10509
Submitter:
WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)
Date:
2020/09/12
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_014643915.1 (latest)
RefSeq assembly accession:
GCF_014643915.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BMKE01
Assembly method:
gcType assembly pipeline
Genome coverage:
155X
Sequencing technology:
Illumina HiSeq X Ten

IDs: 8117761 [UID] 22187058 [GenBank] 22205328 [RefSeq]

See Genome Information for Oceanisphaera marina

History (Show revision history)

Comment

Genome sequencing and analysis were conducted under the Global Catalogue of Microorganisms (GCM) 10K type strain sequencing project (http://gctype.wdcm.org). The genomic data are also available at http://gctype.wdcm.org/sequencing/GCM10011502 

Annotated by DFAST v.1.2.3 (https://dfast.nig.ac.jp)

Global statistics

Total sequence length3,367,179
Total ungapped length3,367,179
Number of contigs76
Contig N50118,861
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)76

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,367,179763,367,179118,86100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Oceanisphaera marinaOceanisphaera marina

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002936955.1Oceanisphaera arcticatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.5535.7834.02

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected