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ASM1465271v1

Organism name:
Salinicola rhizosphaerae (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: KCTC 32998
BioSample:
SAMD00245635
BioProject:
PRJDB10508
Submitter:
WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)
Date:
2020/09/12
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_014652715.1 (latest)
RefSeq assembly accession:
GCF_014652715.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BMZI01
Assembly method:
gcType assembly pipeline
Genome coverage:
298X
Sequencing technology:
Illumina HiSeq X Ten

IDs: 8122361 [UID] 22195918 [GenBank] 22213408 [RefSeq]

See Genome Information for Salinicola rhizosphaerae

History (Show revision history)

Comment

Genome sequencing and analysis were conducted under the Global Catalogue of Microorganisms (GCM) 10K type strain sequencing project (http://gctype.wdcm.org). The genomic data are also available at http://gctype.wdcm.org/sequencing/GCM10009038 

Annotated by DFAST v.1.2.3 (https://dfast.nig.ac.jp)

Global statistics

Total sequence length4,215,262
Total ungapped length4,206,933
Gaps between scaffolds0
Number of scaffolds25
Scaffold N50568,438
Scaffold L504
Number of contigs94
Contig N50106,295
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)25

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,215,262254,206,933568,438690

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Salinicola rhizosphaeraeSalinicola rhizosphaerae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003206135.1Salinicola salariussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.1725.5327.66

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected