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Source database (GenBank or RefSeq) File type

ASM1480567v1.1

Organism name:

Mercenaria mercenaria (northern quahog)

Isolate:

YKG-2019

BioSample:

SAMN13611631

BioProject:

PRJNA596049

Submitter:

Institute of Oceanology, Chinese Academy of Sciences

Date:

2020/10/02

Release type:

minor

Assembly level:

Chromosome

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_014805675.2 (latest)

RefSeq assembly accession:

GCF_014805675.1 (suppressed) see latest RefSeq assembly for this species

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for GenBank version

WGS Project:

WTXZ01

Assembly method:

WTDBG v. 2.2; Quiver v. 6.0.1; fragScaff v. 140324; Lachesis v. 201701

Expected final version:

yes

Genome coverage:

555.12x

Sequencing technology:

PacBio Sequel; Illumina HiSeq

IDs: 11412411 [UID] 30054618 [GenBank] 30288768 [RefSeq]

See Genome Information for Mercenaria mercenaria

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_014805675.2	≠	GCF_014805675.1	ASM1480567v1.1	Chromosome	Latest GenBank, RefSeq suppressed
GCA_014805675.1	n/a	n/a	ASM1480567v1	Chromosome	Replaced GenBank

Comment

In November 2021 106 WTXZ01 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length	1,777,616,429
Total ungapped length	1,768,036,014
Gaps between scaffolds	0
Number of scaffolds	1,431
Scaffold N50	91,379,220
Scaffold L50	9
Number of contigs	4,112
Contig N50	1,779,571
Contig L50	259
Total number of chromosomes and plasmids	19
Number of component sequences (WGS or clone)	1,431

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM025866.1	=	NC_059305.1	0
Chromosome 2	CM025867.1	=	NC_059306.1	0
Chromosome 3	CM025868.1	=	NC_059307.1	0
Chromosome 4	CM025869.1	=	NC_059308.1	0
Chromosome 5	CM025870.1	=	NC_059309.1	0
Chromosome 6	CM025871.1	=	NC_059310.1	0
Chromosome 7	CM025872.1	=	NC_059311.1	0
Chromosome 8	CM025873.1	=	NC_059312.1	0
Chromosome 9	CM025874.1	=	NC_059313.1	0
Chromosome 10	CM025875.1	=	NC_059314.1	0
Chromosome 11	CM025876.1	=	NC_059315.1	0
Chromosome 12	CM025877.1	=	NC_059316.1	0
Chromosome 13	CM025878.1	=	NC_059317.1	0
Chromosome 14	CM025879.1	=	NC_059318.1	0
Chromosome 15	CM025880.1	=	NC_059319.1	0
Chromosome 16	CM025881.1	=	NC_059320.1	0
Chromosome 17	CM025882.1	=	NC_059321.1	0
Chromosome 18	CM025883.1	=	NC_059322.1	0
Chromosome 19	CM025884.1	=	NC_059323.1	0
unplaced	n/a	n/a	n/a	1,412

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,777,616,429	1,431	1,768,036,014	91,379,220	2,681
Chromosome 1	86,026,883	1	85,404,305	86,026,883	167
Chromosome 2	125,760,036	1	125,266,671	125,760,036	144
Chromosome 3	92,285,503	1	91,868,730	92,285,503	117
Chromosome 4	91,379,220	1	91,011,599	91,379,220	103
Chromosome 5	108,648,503	1	108,214,863	108,648,503	129
Chromosome 6	87,328,355	1	86,756,206	87,328,355	144
Chromosome 7	110,078,379	1	109,507,756	110,078,379	166
Chromosome 8	96,626,343	1	96,081,442	96,626,343	165
Chromosome 9	126,482,403	1	126,009,109	126,482,403	141
Chromosome 10	93,586,546	1	93,240,707	93,586,546	117
Chromosome 11	98,843,772	1	98,430,820	98,843,772	111
Chromosome 12	90,138,423	1	89,484,409	90,138,423	183
Chromosome 13	82,308,154	1	82,041,137	82,308,154	84
Chromosome 14	90,603,899	1	90,004,141	90,603,899	172
Chromosome 15	85,354,191	1	84,970,516	85,354,191	114
Chromosome 16	76,630,363	1	76,283,893	76,630,363	90
Chromosome 17	70,645,253	1	70,189,308	70,645,253	135
Chromosome 18	75,297,454	1	74,427,666	75,297,454	222
Chromosome 19	49,502,607	1	49,032,697	49,502,607	133
unplaced	40,090,142	1,412	39,810,039	42,159	44

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ASM1480567v1.1

See Genome Information for Mercenaria mercenaria

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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