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Source database (GenBank or RefSeq) File type

ASM1480568v1

Organism name:

Silurus meridionalis (bony fishes)

Isolate:

SWU-2019-XX

Sex:

female

BioSample:

SAMN14558653

BioProject:

PRJNA623722

Submitter:

Southwest University

Date:

2020/10/02

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_014805685.1 (latest)

RefSeq assembly accession:

GCF_014805685.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JABFDY01

Assembly method:

WTDBG v. 1.2.8

Expected final version:

yes

Genome coverage:

97.83x

Sequencing technology:

Oxford Nanopore PromethION

IDs: 8220371 [UID] 22447898 [GenBank] 31815588 [RefSeq]

See Genome Information for Silurus meridionalis

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_014805685.1	≠	GCF_014805685.1	ASM1480568v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	742,596,447
Total ungapped length	741,250,839
Gaps between scaffolds	0
Number of scaffolds	286
Scaffold N50	28,049,309
Scaffold L50	12
Number of contigs	883
Contig N50	13,195,069
Contig L50	20
Total number of chromosomes and plasmids	30
Number of component sequences (WGS or clone)	286

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM025885.1	=	NC_060884.1	0
Chromosome 2	CM025886.1	=	NC_060885.1	0
Chromosome 3	CM025887.1	=	NC_060886.1	0
Chromosome 4	CM025888.1	=	NC_060887.1	0
Chromosome 5	CM025889.1	=	NC_060888.1	0
Chromosome 6	CM025890.1	=	NC_060889.1	0
Chromosome 7	CM025891.1	=	NC_060890.1	0
Chromosome 8	CM025892.1	=	NC_060891.1	0
Chromosome 9	CM025893.1	=	NC_060892.1	0
Chromosome 10	CM025894.1	=	NC_060893.1	0
Chromosome 11	CM025895.1	=	NC_060894.1	0
Chromosome 12	CM025896.1	=	NC_060895.1	0
Chromosome 13	CM025897.1	=	NC_060896.1	0
Chromosome 14	CM025898.1	=	NC_060897.1	0
Chromosome 15	CM025899.1	=	NC_060898.1	0
Chromosome 16	CM025900.1	=	NC_060899.1	0
Chromosome 17	CM025901.1	=	NC_060900.1	0
Chromosome 18	CM025902.1	=	NC_060901.1	0
Chromosome 19	CM025903.1	=	NC_060902.1	0
Chromosome 20	CM025904.1	=	NC_060903.1	0
Chromosome 21	CM025905.1	=	NC_060904.1	0
Chromosome 22	CM025906.1	=	NC_060905.1	0
Chromosome 23	CM025907.1	=	NC_060906.1	0
Chromosome 24	CM025908.1	=	NC_060907.1	0
Chromosome 25	CM025909.1	=	NC_060908.1	0
Chromosome 26	CM025910.1	=	NC_060909.1	0
Chromosome 27	CM025911.1	=	NC_060910.1	0
Chromosome 28	CM025912.1	=	NC_060911.1	0
Chromosome 29	CM025913.1	=	NC_060912.1	0
unplaced	n/a	n/a	n/a	256

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	742,579,920	285	741,234,312	28,049,309	597
Chromosome 1	36,269,185	1	36,124,636	36,269,185	8
Chromosome 2	34,710,094	1	34,709,994	34,710,094	1
Chromosome 3	33,553,502	1	33,548,085	33,553,502	46
Chromosome 4	42,378,593	1	42,356,596	42,378,593	140
Chromosome 5	29,056,285	1	28,958,033	29,056,285	6
Chromosome 6	34,169,213	1	33,934,145	34,169,213	92
Chromosome 7	28,481,530	1	28,433,764	28,481,530	3
Chromosome 8	29,922,897	1	29,831,621	29,922,897	13
Chromosome 9	26,980,212	1	26,978,812	26,980,212	14
Chromosome 10	28,744,419	1	28,698,763	28,744,419	26
Chromosome 11	23,355,278	1	23,355,178	23,355,278	1
Chromosome 12	26,678,442	1	26,584,320	26,678,442	15
Chromosome 13	29,527,007	1	29,526,607	29,527,007	4
Chromosome 14	24,070,274	1	24,025,003	24,070,274	17
Chromosome 15	24,572,301	1	24,572,101	24,572,301	2
Chromosome 16	17,279,140	1	17,278,640	17,279,140	5
Chromosome 17	29,521,497	1	29,480,015	29,521,497	7
Chromosome 18	28,049,309	1	27,941,432	28,049,309	22
Chromosome 19	18,791,108	1	18,762,375	18,791,108	4
Chromosome 20	19,539,008	1	19,538,708	19,539,008	3
Chromosome 21	19,016,584	1	19,014,389	19,016,584	3
Chromosome 22	20,567,408	1	20,489,817	20,567,408	4
Chromosome 23	26,599,579	1	26,586,979	26,599,579	126
Chromosome 24	21,332,171	1	21,298,331	21,332,171	8
Chromosome 25	17,730,512	1	17,730,412	17,730,512	1
Chromosome 26	19,407,648	1	19,406,348	19,407,648	13
Chromosome 27	19,463,638	1	19,425,886	19,463,638	6
Chromosome 28	16,414,165	1	16,350,662	16,414,165	1
Chromosome 29	12,790,437	1	12,684,176	12,790,437	6
unplaced	3,608,484	256	3,608,484	14,229	0

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ASM1480568v1

See Genome Information for Silurus meridionalis

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear