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MPIMG_talOcc4

  • Anomalous assembly.
Organism name:
Talpa occidentalis (Iberian mole)
Isolate:
TD23
Sex:
male
BioSample:
SAMN10160270
BioProject:
PRJNA494291
Submitter:
Max Planck Institute for Molecular Genetics
Date:
2020/10/19
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_014898055.1 (replaced)
RefSeq assembly accession:
GCF_014898055.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
RCFO01
Assembly method:
CANU v. 1.6; 3D-DNA v. 3f18163
Expected final version:
yes
Genome coverage:
50.0x
Sequencing technology:
PacBio; Illumina NextSeq

IDs: 8251561 [UID] 22536648 [GenBank] 22923998 [RefSeq]

See Genome Information for Talpa occidentalis

History (Show revision history)

Comment

In February 2023 1223 sequences were suppressed because they were found to be contaminants.
Contaminant sequences were removed from RCFO01000001.1 in February 2023

Global statistics

Total sequence length2,098,020,470
Total ungapped length2,097,656,470
Gaps between scaffolds0
Number of scaffolds4,425
Scaffold N50119,794,413
Scaffold L508
Number of contigs8,065
Contig N502,611,711
Contig L50211
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)4,425

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,098,003,5084,4242,097,639,508119,794,4133,6400
MoleculeTotal
Length
Mitochondrion MT16,962