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Source database (GenBank or RefSeq) File type

MPIMG_talOcc4v2.1

Organism name:

Talpa occidentalis (Iberian mole)

Isolate:

TD23

Sex:

male

BioSample:

SAMN10160270

BioProject:

PRJNA494291

Submitter:

Max Planck Institute for Molecular Genetics

Date:

2020/10/19

Assembly level:

Scaffold

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_014898055.3 (latest)

RefSeq assembly accession:

GCF_014898055.3 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

RCFO01

Assembly method:

CANU v. 1.6; 3D-DNA v. 3f18163

Expected final version:

yes

Genome coverage:

50.0x

Sequencing technology:

PacBio; Illumina NextSeq

IDs: 16017781 [UID] 41103068 [GenBank] 41668518 [RefSeq]

See Genome Information for Talpa occidentalis

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_014898055.3	≠	GCF_014898055.3	MPIMG_talOcc4v2.1	Scaffold	Latest GenBank, Latest RefSeq
GCA_014898055.2	≠	GCF_014898055.2	MPIMG_talOcc4v2	Scaffold	Replaced RefSeq, GenBank suppressed
GCA_014898055.1	≠	GCF_014898055.1	MPIMG_talOcc4	Scaffold	Replaced GenBank, Replaced RefSeq

Comment

In February 2023 1223 sequences were suppressed because they were found to be contaminants.
Contaminant sequences were removed from RCFO01000001.1 in February 2023

Global statistics

Total sequence length	2,080,989,295
Total ungapped length	2,078,708,107
Gaps between scaffolds	0
Number of scaffolds	3,202
Scaffold N50	119,794,413
Scaffold L50	8
Number of contigs	6,777
Contig N50	2,628,036
Contig L50	207
Total number of chromosomes and plasmids	1
Number of component sequences (WGS or clone)	3,202

Assembly

Genome Assembly

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MPIMG_talOcc4v2.1

See Genome Information for Talpa occidentalis

Pathogen Detection Resources

History (Show revision history)

Comment

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Assembly Information

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Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear