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Source database (GenBank or RefSeq) File type

NemWhi1

Organism name:

Nematolebias whitei (Rio pearlfish)

Isolate:

Nwh7

Sex:

female

BioSample:

SAMN12588121

BioProject:

PRJNA560526

Submitter:

Michigan State University

Date:

2021/03/24

Release type:

minor

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_014905685.2 (latest)

RefSeq assembly accession:

GCF_014905685.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: 1 unlocalized scaffold on chromosome MT

Data displayed for RefSeq version

WGS Project:

JAAMPK01

Assembly method:

SuperNova, Chicago, HiC v. April 2020

Expected final version:

yes

Genome coverage:

53.63x

Sequencing technology:

Illumina

IDs: 9635761 [UID] 25788498 [GenBank] 27844178 [RefSeq]

See Genome Information for Nematolebias whitei

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_014905685.2	≠	GCF_014905685.2	NemWhi1	Chromosome	Latest GenBank, Latest RefSeq
GCA_014905685.1	≠	GCF_014905685.1	NemWhi1	Scaffold	Replaced GenBank, Replaced RefSeq

Comment

Global statistics

Total sequence length	1,218,316,901
Total ungapped length	1,120,653,511
Gaps between scaffolds	0
Number of scaffolds	18,998
Scaffold N50	49,984,095
Scaffold L50	11
Number of contigs	119,519
Contig N50	19,984
Contig L50	15,690
Total number of chromosomes and plasmids	24
Number of component sequences (WGS or clone)	18,998

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM029733.1	=	NC_056498.1	0
Chromosome 2	CM029734.1	=	NC_056499.1	0
Chromosome 3	CM029735.1	=	NC_056500.1	0
Chromosome 4	CM029736.1	=	NC_056501.1	0
Chromosome 5	CM029737.1	=	NC_056502.1	0
Chromosome 6	CM029738.1	=	NC_056503.1	0
Chromosome 7	CM029739.1	=	NC_056504.1	0
Chromosome 8	CM029740.1	=	NC_056505.1	0
Chromosome 9	CM029741.1	=	NC_056506.1	0
Chromosome 10	CM029742.1	=	NC_056507.1	0
Chromosome 11	CM029743.1	=	NC_056508.1	0
Chromosome 12	CM029744.1	=	NC_056509.1	0
Chromosome 13	CM029745.1	=	NC_056510.1	0
Chromosome 14	CM029746.1	=	NC_056511.1	0
Chromosome 15	CM029747.1	=	NC_056512.1	0
Chromosome 16	CM029748.1	=	NC_056513.1	0
Chromosome 17	CM029749.1	=	NC_056514.1	0
Chromosome 18	CM029750.1	=	NC_056515.1	0
Chromosome 19	CM029751.1	=	NC_056516.1	0
Chromosome 20	CM029752.1	=	NC_056517.1	0
Chromosome 21	CM029753.1	=	NC_056518.1	0
Chromosome 22	CM029754.1	=	NC_056519.1	0
Chromosome 23	CM029755.1	=	NC_056520.1	0
Chromosome 24	CM029756.1	=	NC_056521.1	0
unplaced	n/a	n/a	n/a	18,974

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,218,316,901	18,998	1,120,653,511	49,984,095	100,521
Chromosome 1	95,146,955	1	86,278,675	95,146,955	8,712
Chromosome 2	62,661,486	1	56,478,676	62,661,486	5,140
Chromosome 3	61,191,238	1	55,606,338	61,191,238	4,711
Chromosome 4	57,146,851	1	52,089,671	57,146,851	4,462
Chromosome 5	55,353,246	1	50,884,396	55,353,246	4,311
Chromosome 6	53,285,642	1	48,892,312	53,285,642	5,920
Chromosome 7	52,984,101	1	48,450,881	52,984,101	4,143
Chromosome 8	52,891,703	1	48,428,873	52,891,703	4,209
Chromosome 9	52,786,208	1	47,948,948	52,786,208	4,294
Chromosome 10	51,351,675	1	47,369,595	51,351,675	4,182
Chromosome 11	49,984,095	1	46,359,235	49,984,095	3,904
Chromosome 12	49,669,405	1	45,949,305	49,669,405	4,297
Chromosome 13	48,466,772	1	44,095,712	48,466,772	3,874
Chromosome 14	47,702,315	1	43,370,925	47,702,315	3,959
Chromosome 15	47,008,429	1	43,258,629	47,008,429	3,920
Chromosome 16	46,051,886	1	41,410,016	46,051,886	3,807
Chromosome 17	42,795,811	1	39,526,241	42,795,811	3,402
Chromosome 18	41,413,846	1	37,682,206	41,413,846	3,342
Chromosome 19	41,097,853	1	38,016,893	41,097,853	3,590
Chromosome 20	40,973,070	1	37,697,400	40,973,070	3,776
Chromosome 21	35,643,060	1	32,940,370	35,643,060	2,825
Chromosome 22	32,525,398	1	30,449,458	32,525,398	2,361
Chromosome 23	25,025,306	1	23,280,996	25,025,306	1,846
Chromosome 24	2,648,531	1	2,415,221	2,648,531	381
unplaced	72,512,019	18,974	71,772,539	5,127	5,153

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NemWhi1

See Genome Information for Nematolebias whitei

Pathogen Detection Resources

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