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Source database (GenBank or RefSeq) File type

bFalRus1.pri

Organism name:

Falco rusticolus (gyrfalcon)

Isolate:

bFalRus1

Sex:

female

BioSample:

SAMN12629496

BioProject:

PRJNA561988

Submitter:

Vertebrate Genomes Project

Date:

2020/11/03

Assembly type:

haploid (principal pseudohaplotype of diploid)

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_015220075.1 (latest)

RefSeq assembly accession:

GCF_015220075.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Different: chromosome MT.

Data displayed for RefSeq version

WGS Project:

JADCQO01

Assembly method:

FALCON v. falcon-2018.31.08-03.06; FALCON-Unzip v. 6.0.0.47841; purge_dups github v. ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; Scaff10x v. 4.1.0; Bionano Solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Polish v. pbgcpp:1.9.0; Longranger Align v. 2.2.2; freebayes v. 1.3.1; gEVAL manual curation v. 2020-07-20; VGP assembly pipeline v. 1.6

Expected final version:

Genome coverage:

44.28x

Sequencing technology:

PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS

Linked assembly:

GCA_015220155.1 (alternate pseudohaplotype of diploid)

IDs: 8408751 [UID] 22893308 [GenBank] 22953488 [RefSeq]

See Genome Information for Falco rusticolus

Pathogen Detection Resources

There are 7 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_015220075.1	≠	GCF_015220075.1	bFalRus1.pri	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	1,195,847,496
Total ungapped length	1,190,501,682
Gaps between scaffolds	0
Number of scaffolds	133
Scaffold N50	91,094,845
Scaffold L50	6
Number of contigs	768
Contig N50	15,323,486
Contig L50	24
Total number of chromosomes and plasmids	25
Number of component sequences (WGS or clone)	133

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM026666.1	=	NC_051187.1	0
Chromosome 2	CM026667.1	=	NC_051188.1	0
Chromosome 3	CM026668.1	=	NC_051189.1	0
Chromosome 4	CM026669.1	=	NC_051190.1	0
Chromosome 5	CM026670.1	=	NC_051191.1	0
Chromosome 6	CM026671.1	=	NC_051192.1	0
Chromosome 7	CM026672.1	=	NC_051193.1	0
Chromosome 8	CM026673.1	=	NC_051194.1	0
Chromosome 9	CM026674.1	=	NC_051195.1	0
Chromosome 10	CM026675.1	=	NC_051196.1	0
Chromosome 11	CM026676.1	=	NC_051197.1	0
Chromosome 12	CM026677.1	=	NC_051198.1	0
Chromosome 13	CM026678.1	=	NC_051199.1	0
Chromosome 14	CM026679.1	=	NC_051200.1	0
Chromosome 15	CM026680.1	=	NC_051201.1	0
Chromosome 16	CM026681.1	=	NC_051202.1	0
Chromosome 17	CM026682.1	=	NC_051203.1	0
Chromosome 18	CM026683.1	=	NC_051204.1	0
Chromosome 19	CM026684.1	=	NC_051205.1	0
Chromosome 20	CM026685.1	=	NC_051206.1	0
Chromosome 21	CM026686.1	=	NC_051207.1	0
Chromosome 22	CM026687.1	=	NC_051208.1	0
Chromosome W	CM026688.1	=	NC_051209.1	0
Chromosome Z	CM026689.1	=	NC_051210.1	0
unplaced	n/a	n/a	n/a	108

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,195,829,278	132	1,190,483,464	91,094,845	635
Chromosome 1	126,922,963	1	126,701,416	126,922,963	19
Chromosome 2	122,153,554	1	122,018,050	122,153,554	16
Chromosome 3	121,276,792	1	121,103,312	121,276,792	14
Chromosome 4	112,438,257	1	112,315,986	112,438,257	18
Chromosome 5	92,439,089	1	92,391,826	92,439,089	8
Chromosome 6	91,094,845	1	91,094,622	91,094,845	4
Chromosome 7	72,902,640	1	72,902,232	72,902,640	5
Chromosome 8	65,417,759	1	65,250,706	65,417,759	5
Chromosome 9	54,018,959	1	53,984,950	54,018,959	7
Chromosome 10	38,161,925	1	38,161,578	38,161,925	7
Chromosome 11	35,666,015	1	35,665,791	35,666,015	4
Chromosome 12	33,884,028	1	33,706,847	33,884,028	5
Chromosome 13	30,790,089	1	30,787,183	30,790,089	12
Chromosome 14	24,097,451	1	24,026,344	24,097,451	1
Chromosome 15	23,311,196	1	23,206,635	23,311,196	1
Chromosome 16	8,171,160	1	8,170,961	8,171,160	2
Chromosome 17	7,845,494	1	7,633,889	7,845,494	5
Chromosome 18	6,718,660	1	6,692,687	6,718,660	13
Chromosome 19	6,450,865	1	6,265,965	6,450,865	22
Chromosome 20	6,217,219	1	6,107,476	6,217,219	3
Chromosome 21	485,429	1	483,629	485,429	6
Chromosome 22	425,072	1	423,872	425,072	3
Chromosome W	25,584,520	1	23,478,766	25,584,520	164
Chromosome Z	84,785,561	1	83,345,371	84,785,561	275
unplaced	4,569,736	108	4,563,370	48,611	16

Assembly

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bFalRus1.pri

See Genome Information for Falco rusticolus

Pathogen Detection Resources

There are 7 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Global assembly definition

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Assembly Unit Name
Primary Assembly
non-nuclear