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Source database (GenBank or RefSeq) File type

mChoDid1.pri

Organism name:

Choloepus didactylus (southern two-toed sloth)

Isolate:

mChoDid1

Sex:

male

BioSample:

SAMN12612024

BioProject:

PRJNA561937

Submitter:

Vertebrate Genomes Project

Date:

2020/11/03

Assembly type:

haploid (principal pseudohaplotype of diploid)

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_015220235.1 (latest)

RefSeq assembly accession:

GCF_015220235.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Different: chromosome MT.

Data displayed for RefSeq version

WGS Project:

JADCNF01

Assembly method:

FALCON v. falcon-2018.31.08-03.06; FALCON-Unzip v. 6.0.0.47841; purge_dups github v. ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; Scaff10x v. 4.1.0; Bionano Solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Polish pbgcpp v. 1.9.0; Longranger Align v. 2.2.2; freebayes v. 1.3.1; gEVAL manual curation v. 2020-09-14; VGP assembly pipeline v. 1.6

Expected final version:

Genome coverage:

56.84x

Sequencing technology:

PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS

Linked assembly:

GCA_015220265.1 (alternate pseudohaplotype of diploid)

IDs: 8409001 [UID] 22893318 [GenBank] 23223548 [RefSeq]

See Genome Information for Choloepus didactylus

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_015220235.1	≠	GCF_015220235.1	mChoDid1.pri	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	3,214,702,648
Total ungapped length	3,133,710,253
Gaps between scaffolds	0
Number of scaffolds	146
Scaffold N50	146,178,362
Scaffold L50	9
Number of contigs	1,385
Contig N50	20,994,632
Contig L50	45
Total number of chromosomes and plasmids	30
Number of component sequences (WGS or clone)	146

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM026690.1	=	NC_051307.1	0
Chromosome 2	CM026691.1	=	NC_051308.1	0
Chromosome 3	CM026692.1	=	NC_051309.1	0
Chromosome 4	CM026693.1	=	NC_051310.1	0
Chromosome 5	CM026694.1	=	NC_051311.1	3
Chromosome 6	CM026695.1	=	NC_051312.1	0
Chromosome 7	CM026696.1	=	NC_051313.1	0
Chromosome 8	CM026697.1	=	NC_051314.1	1
Chromosome 9	CM026698.1	=	NC_051315.1	0
Chromosome 10	CM026699.1	=	NC_051316.1	0
Chromosome 11	CM026700.1	=	NC_051317.1	10
Chromosome 12	CM026701.1	=	NC_051318.1	1
Chromosome 13	CM026702.1	=	NC_051319.1	2
Chromosome 14	CM026703.1	=	NC_051320.1	0
Chromosome 15	CM026704.1	=	NC_051321.1	0
Chromosome 16	CM026705.1	=	NC_051322.1	0
Chromosome 17	CM026706.1	=	NC_051323.1	0
Chromosome 18	CM026707.1	=	NC_051324.1	0
Chromosome 19	CM026708.1	=	NC_051325.1	0
Chromosome 20	CM026709.1	=	NC_051326.1	0
Chromosome 21	CM026710.1	=	NC_051327.1	0
Chromosome 22	CM026711.1	=	NC_051328.1	0
Chromosome 23	CM026712.1	=	NC_051329.1	14
Chromosome 24	CM026713.1	=	NC_051330.1	2
Chromosome 25	CM026714.1	=	NC_051331.1	8
Chromosome 26	CM026715.1	=	NC_051332.1	7
Chromosome 27	CM026716.1	=	NC_051333.1	0
Chromosome X	CM026717.1	=	NC_051334.1	3
Chromosome Y	CM026718.1	=	NC_051335.1	7
unplaced	n/a	n/a	n/a	58

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	3,214,686,105	145	3,133,693,710	146,178,362	1,239	0
Chromosome 1	Assembled molecule	250,664,781	1	250,129,526	250,664,781	27	0
Chromosome 2	Assembled molecule	248,084,734	1	247,269,325	248,084,734	53	0
Chromosome 3	Assembled molecule	223,233,325	1	223,185,369	223,233,325	24	0
Chromosome 4	Assembled molecule	196,373,313	1	196,107,113	196,373,313	40	0
Chromosome 5	AllAssembled moleculeUnlocalized scaffolds	170,333,127168,700,1871,632,940	413	169,847,345168,228,8001,618,545	168,700,187168,700,187432,184	50419	000
Chromosome 6	Assembled molecule	156,663,619	1	154,817,207	156,663,619	76	0
Chromosome 7	Assembled molecule	156,022,981	1	155,980,639	156,022,981	20	0
Chromosome 8	AllAssembled moleculeUnlocalized scaffolds	146,227,253146,178,36248,891	211	146,204,899146,156,00848,891	146,178,362146,178,36248,891	11110	000
Chromosome 9	Assembled molecule	135,328,281	1	134,329,805	135,328,281	22	0
Chromosome 10	Assembled molecule	132,469,143	1	131,623,540	132,469,143	55	0
Chromosome 11	AllAssembled moleculeUnlocalized scaffolds	110,097,46190,811,02219,286,439	11110	107,746,19589,904,75917,841,436	90,811,02290,811,0225,293,750	542430	000
Chromosome 12	AllAssembled moleculeUnlocalized scaffolds	103,275,602102,976,318299,284	211	100,452,914100,222,982229,932	102,976,318102,976,318299,284	28253	000
Chromosome 13	AllAssembled moleculeUnlocalized scaffolds	102,466,698100,229,1382,237,560	312	102,080,12099,842,7712,237,349	100,229,138100,229,1382,170,093	24213	000
Chromosome 14	Assembled molecule	100,080,887	1	100,076,567	100,080,887	14	0
Chromosome 15	Assembled molecule	89,644,403	1	88,749,719	89,644,403	19	0
Chromosome 16	Assembled molecule	86,887,137	1	85,786,991	86,887,137	21	0
Chromosome 17	Assembled molecule	78,810,110	1	77,917,670	78,810,110	24	0
Chromosome 18	Assembled molecule	77,031,504	1	76,000,037	77,031,504	26	0
Chromosome 19	Assembled molecule	66,415,491	1	65,943,558	66,415,491	24	0
Chromosome 20	Assembled molecule	64,556,003	1	64,015,799	64,556,003	13	0
Chromosome 21	Assembled molecule	53,136,999	1	52,054,985	53,136,999	42	0
Chromosome 22	Assembled molecule	44,682,675	1	44,579,188	44,682,675	7	0
Chromosome 23	AllAssembled moleculeUnlocalized scaffolds	42,879,87832,044,89610,834,982	15114	41,686,39631,536,99510,149,401	32,044,89632,044,8961,083,205	651847	000
Chromosome 24	AllAssembled moleculeUnlocalized scaffolds	30,270,67425,766,2884,504,386	312	29,088,69524,928,7354,159,960	25,766,28825,766,2882,347,058	27225	000
Chromosome 25	AllAssembled moleculeUnlocalized scaffolds	28,335,10510,490,87817,844,227	918	28,084,37110,470,28817,614,083	8,506,32810,490,8787,803,001	501832	000
Chromosome 26	AllAssembled moleculeUnlocalized scaffolds	26,365,25517,351,5489,013,707	817	24,269,23515,459,2388,809,997	17,351,54817,351,5483,641,002	382612	000
Chromosome 27	Assembled molecule	26,625,015	1	26,575,086	26,625,015	6	0
Chromosome X	AllAssembled moleculeUnlocalized scaffolds	199,179,969193,839,9255,340,044	413	171,663,176166,379,3635,283,813	193,839,925193,839,9253,090,292	29027812	000
Chromosome Y	AllAssembled moleculeUnlocalized scaffolds	66,805,21955,058,53411,746,685	817	35,690,46627,318,9978,371,469	55,058,53455,058,5347,594,001	765521	000
unplaced	Assembled molecule	1,739,463	58	1,737,774	43,748	13	0

Assembly

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mChoDid1.pri

See Genome Information for Choloepus didactylus

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear