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Source database (GenBank or RefSeq) File type

fPygNat1.pri

Organism name:

Pygocentrus nattereri (red-bellied piranha)

Isolate:

fPygNat1

Sex:

male

BioSample:

SAMN12623623

BioProject:

PRJNA561975

Submitter:

Vertebrate Genomes Project

Date:

2020/11/03

Assembly type:

haploid (principal pseudohaplotype of diploid)

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_015220715.1 (latest)

RefSeq assembly accession:

GCF_015220715.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

WGS Project:

JADFAU01

Assembly method:

FALCON v. 2018.31.08-03.06; FALCON-Unzip v. 7.0.1.66975; purge_dups v. v1; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.4; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. SMRTLink7.0.1; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2020-03-13; VGP assembly pipeline individual v. 1.6

Expected final version:

Genome coverage:

77.77x

Sequencing technology:

PacBio Sequel I CLR; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS

Linked assembly:

GCA_015220065.1 (alternate pseudohaplotype of diploid)

IDs: 8409071 [UID] 22893488 [GenBank] 22989918 [RefSeq]

See Genome Information for Pygocentrus nattereri

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_015220715.1	≠	GCF_015220715.1	fPygNat1.pri	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	1,222,050,449
Total ungapped length	1,211,891,265
Gaps between scaffolds	0
Number of scaffolds	55
Scaffold N50	42,283,192
Scaffold L50	13
Number of contigs	358
Contig N50	12,898,870
Contig L50	29
Total number of chromosomes and plasmids	30
Number of component sequences (WGS or clone)	55

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM026721.1	=	NC_051211.1	0
Chromosome 2	CM026722.1	=	NC_051212.1	0
Chromosome 3	CM026723.1	=	NC_051213.1	0
Chromosome 4	CM026724.1	=	NC_051214.1	0
Chromosome 5	CM026725.1	=	NC_051215.1	0
Chromosome 6	CM026726.1	=	NC_051216.1	0
Chromosome 7	CM026727.1	=	NC_051217.1	0
Chromosome 8	CM026728.1	=	NC_051218.1	0
Chromosome 9	CM026729.1	=	NC_051219.1	0
Chromosome 10	CM026730.1	=	NC_051220.1	0
Chromosome 11	CM026731.1	=	NC_051221.1	0
Chromosome 12	CM026732.1	=	NC_051222.1	0
Chromosome 13	CM026733.1	=	NC_051223.1	0
Chromosome 14	CM026734.1	=	NC_051224.1	0
Chromosome 15	CM026735.1	=	NC_051225.1	0
Chromosome 16	CM026736.1	=	NC_051226.1	0
Chromosome 17	CM026737.1	=	NC_051227.1	0
Chromosome 18	CM026738.1	=	NC_051228.1	0
Chromosome 19	CM026739.1	=	NC_051229.1	0
Chromosome 20	CM026740.1	=	NC_051230.1	0
Chromosome 21	CM026741.1	=	NC_051231.1	0
Chromosome 22	CM026742.1	=	NC_051232.1	0
Chromosome 23	CM026743.1	=	NC_051233.1	0
Chromosome 24	CM026744.1	=	NC_051234.1	0
Chromosome 25	CM026745.1	=	NC_051235.1	0
Chromosome 26	CM026746.1	=	NC_051236.1	0
Chromosome 27	CM026747.1	=	NC_051237.1	0
Chromosome 28	CM026748.1	=	NC_051238.1	0
Chromosome 29	CM026749.1	=	NC_051239.1	0
Chromosome 30	CM026750.1	=	NC_051240.1	0
unplaced	n/a	n/a	n/a	25

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,222,050,449	55	1,211,891,265	42,283,192	303
Chromosome 1	57,280,940	1	57,122,362	57,280,940	16
Chromosome 2	56,818,618	1	53,721,936	56,818,618	32
Chromosome 3	51,765,735	1	50,816,212	51,765,735	15
Chromosome 4	51,691,046	1	51,226,745	51,691,046	14
Chromosome 5	51,321,326	1	51,319,526	51,321,326	11
Chromosome 6	49,156,659	1	48,912,943	49,156,659	7
Chromosome 7	47,608,937	1	47,455,658	47,608,937	13
Chromosome 8	47,070,931	1	45,276,760	47,070,931	7
Chromosome 9	46,700,326	1	46,423,398	46,700,326	32
Chromosome 10	44,857,604	1	44,857,104	44,857,604	3
Chromosome 11	43,612,539	1	43,349,946	43,612,539	11
Chromosome 12	42,961,473	1	41,903,926	42,961,473	16
Chromosome 13	42,283,192	1	42,282,479	42,283,192	5
Chromosome 14	42,146,199	1	41,732,896	42,146,199	4
Chromosome 15	41,497,722	1	41,468,799	41,497,722	5
Chromosome 16	41,497,524	1	41,031,204	41,497,524	11
Chromosome 17	41,076,313	1	41,075,513	41,076,313	6
Chromosome 18	40,309,719	1	40,309,319	40,309,719	3
Chromosome 19	39,896,561	1	39,342,656	39,896,561	11
Chromosome 20	37,625,438	1	37,623,525	37,625,438	16
Chromosome 21	36,030,890	1	36,030,390	36,030,890	4
Chromosome 22	34,864,201	1	34,861,501	34,864,201	18
Chromosome 23	34,785,372	1	34,563,727	34,785,372	9
Chromosome 24	34,438,016	1	34,436,516	34,438,016	9
Chromosome 25	34,223,065	1	34,222,565	34,223,065	3
Chromosome 26	31,727,646	1	31,727,646	31,727,646	0
Chromosome 27	28,838,170	1	28,837,770	28,838,170	3
Chromosome 28	27,244,250	1	27,243,550	27,244,250	4
Chromosome 29	21,576,741	1	21,571,697	21,576,741	12
Chromosome 30	20,276,987	1	20,276,787	20,276,987	2
unplaced	866,309	25	866,209	48,863	1

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fPygNat1.pri

See Genome Information for Pygocentrus nattereri

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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