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bHirRus1.pri.v2

Organism name:
Hirundo rustica (Barn swallow)
Isolate:
bHirRus1
Sex:
female
BioSample:
SAMN14675488
BioProject:
PRJNA636192
Submitter:
Vertebrate Genomes Project
Date:
2021/03/02
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_015227805.2 (replaced)
RefSeq assembly accession:
GCF_015227805.1 (replaced)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JADDRP02
Assembly method:
FALCON v. DX 2.0.1; FALCON-Unzip v. DX 1.2.1; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; Arrow polishing and gap filling v. DX 7.0.1.1; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2020-02-11; VGP assembly pipeline v. 1.6; Manual Curation BUSCO v. 2021-01-11
Expected final version:
no
Genome coverage:
51.15x
Sequencing technology:
PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS
Linked assembly:
GCA_015227815.2 (alternate pseudohaplotype of diploid)

IDs: 9503301 [UID] 25493888 [GenBank] 25517108 [RefSeq]

See Genome Information for Hirundo rustica

Pathogen Detection Resources

There are 4 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,105,955,550
Total ungapped length1,080,421,139
Gaps between scaffolds0
Number of scaffolds617
Scaffold N5076,187,387
Scaffold L505
Number of contigs1,719
Contig N502,794,774
Contig L50100
Total number of chromosomes and plasmids39
Number of component sequences (WGS or clone)617

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_015227835.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM026847.1=NC_053450.14
Chromosome 2CM026848.1=NC_053451.11
Chromosome 3CM026849.1=NC_053452.15
Chromosome 4CM026850.1=NC_053453.11
Chromosome 5CM026851.1=NC_053454.14
Chromosome 6CM026852.1=NC_053455.11
Chromosome 7CM026853.1=NC_053456.10
Chromosome 8CM026854.1=NC_053457.10
Chromosome 9CM026855.1=NC_053458.10
Chromosome 10CM026856.1=NC_053459.10
Chromosome 11CM026857.1=NC_053460.11
Chromosome 12CM026858.1=NC_053461.10
Chromosome 13CM026859.1=NC_053462.11
Chromosome 14CM026860.1=NC_053463.10
Chromosome 15CM026861.1=NC_053464.11
Chromosome 16CM026862.1=NC_053465.10
Chromosome 17CM026863.1=NC_053466.10
Chromosome 18CM026864.1=NC_053467.10
Chromosome 19CM026865.1=NC_053468.10
Chromosome 20CM026866.1=NC_053469.10
Chromosome 21CM026867.1=NC_053470.11
Chromosome 22CM026868.1=NC_053471.11
Chromosome 23CM026869.1=NC_053472.10
Chromosome 24CM026870.1=NC_053473.10
Chromosome 25CM026871.1=NC_053474.10
Chromosome 26CM026872.1=NC_053475.10
Chromosome 27CM026873.1=NC_053476.12
Chromosome 28CM026874.1=NC_053477.10
Chromosome 29CM026875.1=NC_053478.12
Chromosome 30CM026876.1=NC_053479.11
Chromosome 31CM026877.1=NC_053480.10
Chromosome 32CM026878.1=NC_053481.10
Chromosome 33CM026879.1=NC_053482.11
Chromosome 34CM026880.1=NC_053483.10
Chromosome 35CM026881.1=NC_053484.10
Chromosome 36CM026882.1=NC_053485.10
Chromosome 37CM026883.1=NC_053486.10
Chromosome WCM026884.1=NC_053487.12
Chromosome ZCM026885.1=NC_053488.11
unplacedn/an/an/a548

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule1,105,955,5506171,080,421,13976,187,3871,1020
Chromosome 1AllAssembled moleculeUnlocalized scaffolds156,850,805156,035,725815,080514153,995,056153,181,476813,580156,035,725156,035,725281,9451111083000
Chromosome 2AllAssembled moleculeUnlocalized scaffolds119,067,143119,023,42143,722211116,933,254116,889,53243,722119,023,421119,023,42143,72277770000
Chromosome 3AllAssembled moleculeUnlocalized scaffolds117,084,363116,801,625282,738615115,113,641114,831,903281,738116,801,625116,801,62592,19969672000
Chromosome 4AllAssembled moleculeUnlocalized scaffolds76,276,89476,187,38789,50721174,797,87074,708,86389,00776,187,38776,187,38789,50748471000
Chromosome 5AllAssembled moleculeUnlocalized scaffolds73,748,30273,257,097491,20551472,356,78271,868,677488,10573,257,09773,257,097116,70843367000
Chromosome 6AllAssembled moleculeUnlocalized scaffolds63,276,23163,258,48917,74221162,627,88262,610,14017,74263,258,48963,258,48917,74232320000
Chromosome 7Assembled molecule38,459,648138,268,56338,459,648180
Chromosome 8Assembled molecule36,085,389135,967,05736,085,38990
Chromosome 9Assembled molecule31,262,510131,158,41331,262,510140
Chromosome 10Assembled molecule25,880,253125,807,52125,880,25370
Chromosome 11AllAssembled moleculeUnlocalized scaffolds21,528,59821,491,85736,74121121,112,60121,075,86036,74121,491,85721,491,85736,74117170000
Chromosome 12Assembled molecule20,890,524120,777,33620,890,52460
Chromosome 13AllAssembled moleculeUnlocalized scaffolds20,344,79920,272,12872,67121120,320,18820,247,51772,67120,272,12820,272,12872,671550000
Chromosome 14Assembled molecule18,810,845118,569,58918,810,84560
Chromosome 15AllAssembled moleculeUnlocalized scaffolds16,575,98516,541,13834,84721116,447,20116,412,35434,84716,541,13816,541,13834,847660000
Chromosome 16Assembled molecule15,277,844114,761,73815,277,84480
Chromosome 17Assembled molecule13,985,943113,727,25913,985,94380
Chromosome 18Assembled molecule12,073,725111,827,40412,073,725130
Chromosome 19Assembled molecule11,382,101111,266,56911,382,10150
Chromosome 20Assembled molecule11,194,341111,071,81011,194,34140
Chromosome 21AllAssembled moleculeUnlocalized scaffolds9,652,2279,617,20435,0232119,569,2559,534,23235,0239,617,2049,617,20435,023880000
Chromosome 22AllAssembled moleculeUnlocalized scaffolds7,603,2067,507,82595,3812117,581,5047,486,62394,8817,507,8257,507,82595,38115141000
Chromosome 23Assembled molecule7,098,40116,998,9267,098,40160
Chromosome 24Assembled molecule6,843,95416,726,7266,843,95480
Chromosome 25Assembled molecule6,778,86216,760,1576,778,862110
Chromosome 26Assembled molecule5,553,54915,402,0505,553,549130
Chromosome 27AllAssembled moleculeUnlocalized scaffolds5,327,3505,236,45190,8993125,250,1315,159,23290,8995,236,4515,236,45165,96516160000
Chromosome 28Assembled molecule5,297,67014,993,2105,297,670160
Chromosome 29AllAssembled moleculeUnlocalized scaffolds2,304,9902,102,120202,8703122,302,3902,099,520202,8702,102,1202,102,120135,211880000
Chromosome 30AllAssembled moleculeUnlocalized scaffolds1,676,3171,648,99827,3192111,672,7471,645,42827,3191,648,9981,648,99827,319990000
Chromosome 31Assembled molecule1,590,08611,544,2141,590,08660
Chromosome 32Assembled molecule784,5791783,779784,57930
Chromosome 33AllAssembled moleculeUnlocalized scaffolds714,005437,724276,281211712,405436,624275,781437,724437,724276,281431000
Chromosome 34Assembled molecule606,1491604,936606,14940
Chromosome 35Assembled molecule523,2301522,630523,23020
Chromosome 36Assembled molecule338,0271337,327338,02720
Chromosome 37Assembled molecule276,3701276,370276,37000
Chromosome WAllAssembled moleculeUnlocalized scaffolds32,379,62331,704,074675,54931228,160,25927,484,710675,54931,704,07431,704,074626,37068680000
Chromosome ZAllAssembled moleculeUnlocalized scaffolds90,157,76790,132,48725,28021182,988,05382,965,02123,03290,132,48790,132,48725,2802532521000
unplacedAssembled molecule20,392,94554820,326,33651,6241440