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Source database (GenBank or RefSeq) File type

UCSD_Lpic_2.1

Organism name:

Lytechinus pictus (painted urchin)

Isolate:

DCL-2020

Sex:

male

BioSample:

SAMN15609743

BioProject:

PRJNA647794

Submitter:

University of North Carolina Wilmington

Date:

2023/03/08

Assembly level:

Chromosome

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_015342785.2 (latest)

RefSeq assembly accession:

GCF_015342785.2 (suppressed) see latest RefSeq assembly for this species

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

JADFUK02

Assembly method:

HiRise v. MAY-2019

Expected final version:

yes

Genome coverage:

2771.0x

Sequencing technology:

Oxford Nanopore; Illumina

IDs: 16088291 [UID] 41273668 [GenBank] 41832198 [RefSeq]

See Genome Information for Lytechinus pictus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_015342785.2	=	GCF_015342785.2	UCSD_Lpic_2.1	Chromosome	Latest GenBank, RefSeq suppressed
GCA_015342785.1	n/a	n/a	UCSD_Lpic_2.0	Chromosome	Replaced GenBank

Comment

Global statistics

Total sequence length	999,463,329
Total ungapped length	998,453,322
Gaps between scaffolds	0
Number of scaffolds	1,307
Scaffold N50	46,031,485
Scaffold L50	8
Number of contigs	11,548
Contig N50	219,603
Contig L50	1,161
Total number of chromosomes and plasmids	19
Number of component sequences (WGS or clone)	1,307

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM027099.2	=	NC_067094.1	0
Chromosome 2	CM027100.2	=	NC_067095.1	0
Chromosome 3	CM027101.2	=	NC_067096.1	0
Chromosome 4	CM027102.2	=	NC_067097.1	0
Chromosome 5	CM027103.2	=	NC_067098.1	0
Chromosome 6	CM027104.2	=	NC_067099.1	0
Chromosome 7	CM027105.2	=	NC_067100.1	0
Chromosome 8	CM027106.2	=	NC_067101.1	0
Chromosome 9	CM027107.2	=	NC_067102.1	0
Chromosome 10	CM027108.2	=	NC_067103.1	0
Chromosome 11	CM027109.2	=	NC_067104.1	0
Chromosome 12	CM027110.2	=	NC_067105.1	0
Chromosome 13	CM027111.2	=	NC_067106.1	0
Chromosome 14	CM027112.2	=	NC_067107.1	0
Chromosome 15	CM027113.2	=	NC_067108.1	0
Chromosome 16	CM027114.2	=	NC_067109.1	0
Chromosome 17	CM027115.2	=	NC_067110.1	0
Chromosome 18	CM027116.2	=	NC_067111.1	0
Chromosome 19	CM027117.2	=	NC_067112.1	0
unplaced	n/a	n/a	n/a	1,288

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	999,463,329	1,307	998,453,322	46,031,485	10,241
Chromosome 1	53,483,832	1	53,437,294	53,483,832	472
Chromosome 2	87,525,344	1	87,442,301	87,525,344	842
Chromosome 3	91,823,530	1	91,752,746	91,823,530	717
Chromosome 4	45,452,740	1	45,403,076	45,452,740	503
Chromosome 5	91,868,403	1	91,786,500	91,868,403	830
Chromosome 6	44,029,694	1	43,967,137	44,029,694	634
Chromosome 7	57,884,361	1	57,836,519	57,884,361	484
Chromosome 8	47,091,676	1	47,039,354	47,091,676	532
Chromosome 9	43,720,784	1	43,665,558	43,720,784	560
Chromosome 10	48,739,896	1	48,689,161	48,739,896	515
Chromosome 11	46,031,485	1	45,982,356	46,031,485	498
Chromosome 12	41,494,477	1	41,450,603	41,494,477	446
Chromosome 13	39,247,870	1	39,203,436	39,247,870	450
Chromosome 14	39,351,772	1	39,311,806	39,351,772	405
Chromosome 15	40,480,694	1	40,434,847	40,480,694	465
Chromosome 16	37,499,870	1	37,459,730	37,499,870	407
Chromosome 17	40,813,684	1	40,766,703	40,813,684	476
Chromosome 18	35,819,468	1	35,785,719	35,819,468	342
Chromosome 19	36,535,053	1	36,488,117	36,535,053	476
unplaced	30,568,696	1,288	30,550,359	35,732	187

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UCSD_Lpic_2.1

See Genome Information for Lytechinus pictus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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