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ASM1562712v1

Organism name:
Acinetobacter rathckeae (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: EC24
BioSample:
SAMN12609920
BioProject:
PRJNA561157
Submitter:
Cornell University
Date:
2020/11/20
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_015627125.1 (latest)
RefSeq assembly accession:
GCF_015627125.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VTDO01
Assembly method:
Discovar de novo v. 52488
Expected final version:
yes
Genome coverage:
407x
Sequencing technology:
Illumina HiSeq

IDs: 8619431 [UID] 23369998 [GenBank] 23389438 [RefSeq]

See Genome Information for Acinetobacter rathckeae

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/18/2020 23:42:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.13
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,635
CDSs (total)::2,561
Genes (coding)::2,510
CDSs (with protein)::2,510
Genes (RNA)::74
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2 (5S)
partial rRNAs::1, 1 (16S, 23S)
tRNAs::66
ncRNAs::4
Pseudo Genes (total)::51
CDSs (without protein)::51
Pseudo Genes (ambiguous residues)::0 of 51
Pseudo Genes (frameshifted)::18 of 51
Pseudo Genes (incomplete)::33 of 51
Pseudo Genes (internal stop)::10 of 51
Pseudo Genes (multiple problems)::9 of 51
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,754,552
Total ungapped length2,754,452
Gaps between scaffolds0
Number of scaffolds17
Scaffold N50399,635
Scaffold L503
Number of contigs18
Contig N50302,413
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)17

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,754,552172,754,452399,63510

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Acinetobacter rathckeaeAcinetobacter rathckeae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_015627105.1Acinetobacter baretiaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.3157.5461.42

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected