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mTacAcu1.pri

Organism name:
Tachyglossus aculeatus (Australian echidna)
Isolate:
mTacAcu1
Sex:
male
BioSample:
SAMN12634963
BioProject:
PRJNA607237
Submitter:
Vertebrate Genomes Project
Date:
2020/12/09
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_015852505.1 (latest)
RefSeq assembly accession:
GCF_015852505.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JADRJE01
Assembly method:
FALCON v. falcon-2018.31.08-03.06; FALCON-Unzip v. 6.0.0.47841; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; Scaff10x v. 4.1.0; Bionano Solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Polish pbgcpp v. 1.9.0; Longranger Align v. 2.2.2; freebayes v. 1.3.1; gEVAL manual curation v. 2020-09-17; Manual Curation v. 2020-10-26; VGP assembly pipeline v. 1.6
Expected final version:
no
Genome coverage:
58.29x
Sequencing technology:
PacBio Sequel I CLR; Illumina NovaSeq; Bionano Genomics DLS; Phase Genomics
Linked assembly:
GCA_015852515.1 (alternate pseudohaplotype of diploid)

IDs: 8746651 [UID] 23714148 [GenBank] 24213648 [RefSeq]

See Genome Information for Tachyglossus aculeatus

Pathogen Detection Resources

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,213,004,214
Total ungapped length2,182,186,851
Gaps between scaffolds0
Number of scaffolds310
Scaffold N5063,379,719
Scaffold L5010
Number of contigs831
Contig N5019,859,057
Contig L5036
Total number of chromosomes and plasmids36
Number of component sequences (WGS or clone)310

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_015852525.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM027595.1=NC_052066.10
Chromosome 2CM027596.1=NC_052067.10
Chromosome 3CM027598.1=NC_052068.10
Chromosome 4CM027600.1=NC_052069.10
Chromosome 5CM027602.1=NC_052070.10
Chromosome 6CM027604.1=NC_052071.10
Chromosome 7CM027606.1=NC_052072.10
Chromosome 8CM027607.1=NC_052073.10
Chromosome 9CM027608.1=NC_052074.10
Chromosome 10CM027609.1=NC_052075.10
Chromosome 11CM027610.1=NC_052076.10
Chromosome 12CM027611.1=NC_052077.14
Chromosome 13CM027612.1=NC_052078.10
Chromosome 14CM027613.1=NC_052079.10
Chromosome 15CM027614.1=NC_052080.10
Chromosome 16CM027615.1=NC_052081.10
Chromosome 17CM027616.1=NC_052082.10
Chromosome 18CM027617.1=NC_052083.10
Chromosome 19CM027618.1=NC_052084.10
Chromosome 20CM027619.1=NC_052085.10
Chromosome 21CM027620.1=NC_052086.10
Chromosome 22CM027621.1=NC_052087.10
Chromosome 23CM027622.1=NC_052088.10
Chromosome 24CM027623.1=NC_052089.10
Chromosome 25CM027624.1=NC_052090.10
Chromosome 26CM027625.1=NC_052091.10
Chromosome 27CM027626.1=NC_052092.10
Chromosome Y1CM027627.1=NC_052093.10
Chromosome Y2CM027628.1=NC_052094.10
Chromosome Y3CM027629.1=NC_052095.14
Chromosome Y4CM027630.1=NC_052096.11
Chromosome X5CM027605.1=NC_052097.10
Chromosome X4CM027603.1=NC_052098.10
Chromosome X3CM027601.1=NC_052099.10
Chromosome X2CM027599.1=NC_052100.10
Chromosome X1CM027597.1=NC_052101.10
unplacedn/an/an/a265

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule2,213,004,2143102,182,186,85163,379,7195210
Chromosome 1Assembled molecule171,479,4291170,642,206171,479,429180
Chromosome 2Assembled molecule176,423,7661175,640,954176,423,766200
Chromosome 3Assembled molecule109,674,2951109,310,827109,674,29590
Chromosome 4Assembled molecule138,035,5761135,657,180138,035,576130
Chromosome 5Assembled molecule106,626,6891105,791,206106,626,689130
Chromosome 6Assembled molecule61,686,051158,870,21261,686,05180
Chromosome 7Assembled molecule63,379,719163,368,34363,379,71950
Chromosome 8Assembled molecule40,220,805140,205,96640,220,80560
Chromosome 9Assembled molecule66,300,460166,299,54766,300,46060
Chromosome 10Assembled molecule60,297,342159,032,19660,297,34250
Chromosome 11Assembled molecule75,091,043174,498,59375,091,043100
Chromosome 12AllAssembled moleculeUnlocalized scaffolds101,702,90845,411,22256,291,686514100,373,11345,411,02654,962,08722,809,07445,411,22217,062,50837235000
Chromosome 13Assembled molecule25,378,613125,378,51525,378,61310
Chromosome 14Assembled molecule59,605,462159,601,40959,605,46240
Chromosome 15Assembled molecule27,836,096127,835,79627,836,09630
Chromosome 16Assembled molecule50,621,482150,620,98350,621,48210
Chromosome 17Assembled molecule59,921,914159,721,00359,921,91470
Chromosome 18Assembled molecule40,915,175140,316,63740,915,175140
Chromosome 19Assembled molecule40,089,708139,085,77140,089,70880
Chromosome 20Assembled molecule32,969,621132,948,65132,969,62160
Chromosome 21Assembled molecule84,223,737183,595,21084,223,737130
Chromosome 22Assembled molecule59,719,615159,718,61159,719,61570
Chromosome 23Assembled molecule43,765,345143,764,74643,765,34560
Chromosome 24Assembled molecule29,570,521129,337,91429,570,52130
Chromosome 25Assembled molecule27,502,845127,186,39527,502,84530
Chromosome 26Assembled molecule21,663,010121,662,99821,663,01010
Chromosome 27Assembled molecule6,647,47516,647,4756,647,47500
Chromosome Y1Assembled molecule348,6401348,640348,64000
Chromosome Y2Assembled molecule5,498,06415,498,0645,498,06400
Chromosome Y3AllAssembled moleculeUnlocalized scaffolds4,099,7253,587,439512,2865143,678,0133,166,819511,1943,587,4393,587,439316,682743000
Chromosome Y4AllAssembled moleculeUnlocalized scaffolds14,396,75513,944,280452,47521114,396,15513,943,780452,37513,944,28013,944,280452,475211000
Chromosome X5Assembled molecule16,101,208115,901,81816,101,20810
Chromosome X4Assembled molecule61,725,854160,809,82361,725,85430
Chromosome X3Assembled molecule35,116,238133,716,07635,116,23870
Chromosome X2Assembled molecule32,032,621131,275,24632,032,62160
Chromosome X1Assembled molecule136,327,3851135,576,717136,327,38590
unplacedAssembled molecule126,009,022265113,873,8421,825,6742590