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Source database (GenBank or RefSeq) File type

Fcat_Pben_1.1_paternal_pri

Organism name:

Prionailurus bengalensis (leopard cat)

Isolate:

Pbe53

Sex:

male

BioSample:

SAMN16486448

BioProject:

PRJNA682572

Submitter:

Texas A&M University

Date:

2021/01/06

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_016509475.2 (latest)

RefSeq assembly accession:

GCF_016509475.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JADZGN01

Assembly method:

NextDenovo v. 2.2-beta.0

Expected final version:

yes

Reference guided assembly:

GCA_000181335.4

Genome coverage:

40.0x

Sequencing technology:

PacBio

IDs: 10600071 [UID] 28100568 [GenBank] 28628198 [RefSeq]

See Genome Information for Prionailurus bengalensis

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_016509475.2	≠	GCF_016509475.1	Fcat_Pben_1.1_paternal_pri	Chromosome	Latest GenBank, Latest RefSeq
GCA_016509475.1	n/a	n/a	Fcat_Pben_1.0_paternal_pri	Chromosome	Replaced GenBank

Comment

This is the paternal pseudohaplotype assembly created from the genome sequence of the F1 female progeny (isolate LxD-97; BioSample SAMN16486446) of a cross between a female Felis catus (isolate Fca508; BioSample SAMN16486447) and male Prionailurus bengalensis (isolate Pbe53; BioSample SAMN16486448).

Global statistics

Total sequence length	2,435,718,761
Total ungapped length	2,435,706,361
Gaps between scaffolds	0
Number of scaffolds	84
Scaffold N50	148,587,958
Scaffold L50	7
Number of contigs	140
Contig N50	82,622,880
Contig L50	11
Total number of chromosomes and plasmids	20
Number of component sequences (WGS or clone)	123

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome A1	CM028179.1	=	NC_057343.1	0
Chromosome B1	CM028182.1	=	NC_057344.1	0
Chromosome C1	CM028186.1	=	NC_057345.1	0
Chromosome D1	CM028188.1	=	NC_057346.1	0
Chromosome E1	CM028192.1	=	NC_057347.1	0
Chromosome A2	CM028180.1	=	NC_057348.1	0
Chromosome B2	CM028183.1	=	NC_057349.1	1
Chromosome C2	CM028187.1	=	NC_057350.1	0
Chromosome D2	CM028189.1	=	NC_057351.1	0
Chromosome E2	CM028193.1	=	NC_057352.1	0
Chromosome F2	CM028196.1	=	NC_057353.1	0
Chromosome A3	CM028181.1	=	NC_057354.1	0
Chromosome B3	CM028184.1	=	NC_057355.1	0
Chromosome D3	CM028190.1	=	NC_057356.1	0
Chromosome E3	CM028194.1	=	NC_057357.1	0
Chromosome B4	CM028185.1	=	NC_057358.1	0
Chromosome D4	CM028191.1	=	NC_057359.1	0
Chromosome E4	CM028195.1	=	NC_057360.1	0
Chromosome X	CM028178.1	=	NC_057361.1	0
unplaced	n/a	n/a	n/a	63

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	2,435,702,060	83	2,435,689,660	148,587,958	56	0
Chromosome A1	Assembled molecule	240,846,738	1	240,846,738	240,846,738	0	0
Chromosome B1	Assembled molecule	206,580,432	1	206,579,832	206,580,432	2	0
Chromosome C1	Assembled molecule	222,814,610	1	222,814,410	222,814,610	2	0
Chromosome D1	Assembled molecule	116,110,351	1	116,110,051	116,110,351	3	0
Chromosome E1	Assembled molecule	61,174,949	1	61,174,349	61,174,949	2	0
Chromosome A2	Assembled molecule	168,940,850	1	168,940,150	168,940,850	3	0
Chromosome B2	AllAssembled moleculeUnlocalized scaffolds	153,327,157152,385,405941,752	211	153,326,457152,385,205941,252	152,385,405152,385,405941,752	321	000
Chromosome C2	Assembled molecule	159,850,271	1	159,849,971	159,850,271	3	0
Chromosome D2	Assembled molecule	87,619,889	1	87,619,389	87,619,889	1	0
Chromosome E2	Assembled molecule	62,591,731	1	62,591,631	62,591,731	1	0
Chromosome F2	Assembled molecule	83,696,601	1	83,696,501	83,696,601	1	0
Chromosome A3	Assembled molecule	140,803,547	1	140,802,947	140,803,547	2	0
Chromosome B3	Assembled molecule	148,587,958	1	148,587,858	148,587,958	1	0
Chromosome D3	Assembled molecule	94,595,352	1	94,594,252	94,595,352	7	0
Chromosome E3	Assembled molecule	41,869,280	1	41,869,280	41,869,280	0	0
Chromosome B4	Assembled molecule	142,198,231	1	142,197,731	142,198,231	1	0
Chromosome D4	Assembled molecule	94,620,989	1	94,620,489	94,620,989	1	0
Chromosome E4	Assembled molecule	69,230,405	1	69,229,405	69,230,405	2	0
Chromosome X	Assembled molecule	129,104,405	1	129,100,905	129,104,405	19	0
unplaced	Assembled molecule	11,138,314	63	11,137,314	251,747	2	0

Assembly

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Fcat_Pben_1.1_paternal_pri

See Genome Information for Prionailurus bengalensis

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear