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Source database (GenBank or RefSeq) File type

CSIRO_BtryS06_freeze2

Organism name:

Bactrocera tryoni (Queensland fruit fly)

Isolate:

S06

Sex:

male

BioSample:

SAMN12586630

BioProject:

PRJNA560467

Submitter:

CSIRO

Date:

2021/01/19

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_016617805.2 (latest)

RefSeq assembly accession:

GCF_016617805.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

VWMZ01

Assembly method:

Flye with Nanopore reads and MaSURCA super reads. v. June 2019

Expected final version:

yes

Genome coverage:

60.0x

Sequencing technology:

Illumina; Oxford Nanopore MinION

IDs: 9334171 [UID] 25148088 [GenBank] 25300968 [RefSeq]

See Genome Information for Bactrocera tryoni

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_016617805.2	≠	GCF_016617805.1	CSIRO_BtryS06_freeze2	Chromosome	Latest GenBank, Latest RefSeq
GCA_016617805.1	n/a	n/a	CSIRO_BtryS06_freeze1	Chromosome	Replaced GenBank

Comment

In Feb 2021 154 of the VWMZ01 sequences were suppressed because they are contaminants.

Global statistics

Total sequence length	570,658,800
Total ungapped length	570,353,295
Gaps between scaffolds	0
Number of scaffolds	5,892
Scaffold N50	81,886,338
Scaffold L50	4
Number of contigs	8,398
Contig N50	350,910
Contig L50	415
Total number of chromosomes and plasmids	6
Number of component sequences (WGS or clone)	5,892

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM028320.1	=	NC_052499.1	0
Chromosome 2	CM028321.1	=	NC_052500.1	0
Chromosome 3	CM028322.1	=	NC_052501.1	0
Chromosome 4	CM028323.1	=	NC_052502.1	0
Chromosome 5	CM028324.1	=	NC_052503.1	0
unplaced	n/a	n/a	n/a	5,886

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	570,642,875	5,891	570,337,370	81,886,338	2,506
Chromosome 1	90,445,925	1	90,409,721	90,445,925	295
Chromosome 2	85,403,544	1	85,356,038	85,403,544	405
Chromosome 3	87,780,629	1	87,730,960	87,780,629	440
Chromosome 4	79,644,399	1	79,605,984	79,644,399	330
Chromosome 5	81,886,338	1	81,838,156	81,886,338	385
unplaced	145,482,040	5,886	145,396,511	22,288,294	651

Assembly

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Download Assembly

CSIRO_BtryS06_freeze2

See Genome Information for Bactrocera tryoni

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear