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Prin_Dtei_1.1

Organism name:
Drosophila teissieri (flies)
Infraspecific name:
Strain: GT53w
Sex:
female
BioSample:
SAMN15594708
BioProject:
PRJNA647698
Submitter:
Princeton University
Date:
2021/08/03
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_016746235.2 (latest)
RefSeq assembly accession:
GCF_016746235.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAEDAA02
Assembly method:
FALCON v. Commit 0ed1dd6c9e124b107ee1ce151bb7420c2fcc08b4; Canu v. Commit 10175ecd011b52ae84cc79acc1a7bb452057b0d9; quickmerge v. Commit a3ce2ad79cc4651eebe7dbe9e0434a91773498d3; FinisherSC v. Imoteph fork, commit 7077dd9cb0db6ac0315b0dbb7080273eb1e1065d
Expected final version:
yes
Reference guided assembly:
Drosophila melanogaster FlyBase release 6.26
Genome coverage:
168.0x
Sequencing technology:
PacBio RSII; Illumina HiSeq

IDs: 10622371 [UID] 28177188 [GenBank] 28924958 [RefSeq]

See Genome Information for Drosophila teissieri

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length149,494,471
Total ungapped length149,491,184
Gaps between scaffolds0
Number of scaffolds91
Scaffold N5024,551,875
Scaffold L503
Number of contigs124
Contig N506,375,862
Contig L505
Total number of chromosomes and plasmids6
Number of component sequences (WGS or clone)91

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_016746255.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 2LCM028594.2=NC_053029.10
Chromosome 2RCM028595.2=NC_053030.10
Chromosome 3LCM028596.2=NC_053031.10
Chromosome 3RCM028597.2=NC_053032.10
Chromosome 4CM028592.2=NC_053033.10
Chromosome XCM028593.2=NC_053034.10
unplacedn/an/an/a85

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All149,494,47191149,491,18424,551,875330
Chromosome 2L28,277,466128,275,57528,277,466190
Chromosome 2R23,768,293123,767,49723,768,29380
Chromosome 3L24,551,875124,551,77524,551,87510
Chromosome 3R32,100,711132,100,51132,100,71120
Chromosome 41,428,14411,428,0441,428,14410
Chromosome X23,880,222123,880,02223,880,22220
unplaced15,487,7608515,487,760940,45500