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Source database (GenBank or RefSeq) File type

TS_CPP_V2

Organism name:

Culex pipiens pallens (northern house mosquito)

Isolate:

Sex:

female

BioSample:

SAMN16414976

BioProject:

PRJNA668557

Submitter:

Shandong First Medical University

Date:

2022/08/05

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_016801865.2 (latest)

RefSeq assembly accession:

GCF_016801865.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JADCQB02

Assembly method:

Flye v. 2.6

Expected final version:

yes

Genome coverage:

250.0x

Sequencing technology:

PacBio Sequel

IDs: 13436031 [UID] 35058968 [GenBank] 38179618 [RefSeq]

See Genome Information for Culex pipiens

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_016801865.2	≠	GCF_016801865.2	TS_CPP_V2	Chromosome	Latest GenBank, Latest RefSeq
GCA_016801865.1	≠	GCF_016801865.1	TS_Cpip_V1	Contig	Replaced GenBank, Replaced RefSeq

Comment

Global statistics

Total sequence length	566,354,144
Total ungapped length	566,184,244
Gaps between scaffolds	0
Number of scaffolds	290
Scaffold N50	186,194,774
Scaffold L50	2
Number of contigs	1,989
Contig N50	794,805
Contig L50	204
Total number of chromosomes and plasmids	4
Number of component sequences (WGS or clone)	290

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM044971.1	=	NC_068937.1	0
Chromosome 2	CM044972.1	=	NC_068938.1	0
Chromosome 3	CM044973.1	=	NC_068939.1	0
unplaced	n/a	n/a	n/a	286

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	566,339,288	289	566,169,388	186,194,774	1,699
Chromosome 1	139,153,999	1	139,096,899	139,153,999	571
Chromosome 2	224,097,512	1	224,037,612	224,097,512	599
Chromosome 3	186,194,774	1	186,147,474	186,194,774	473
unplaced	16,893,003	286	16,887,403	233,000	56

Assembly

Genome Assembly

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TS_CPP_V2

See Genome Information for Culex pipiens

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear