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Source database (GenBank or RefSeq) File type

UNIL_Sinv_3.0

Organism name:

Solenopsis invicta (red fire ant)

Isolate:

M01_SB

Sex:

male

BioSample:

SAMN17294113

BioProject:

PRJNA691522

Submitter:

University of Lausanne

Date:

2021/02/03

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_016802725.1 (latest)

RefSeq assembly accession:

GCF_016802725.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAEQMK01

Assembly method:

Flye v. 2.8-b1674; Bionano Solve v. 3.5; Salsa v. 2.2; Allmaps v. 1.0.1

Expected final version:

yes

Genome coverage:

245.0x

Sequencing technology:

PacBio RSII; Oxford Nanopore MinION

IDs: 9219761 [UID] 24832458 [GenBank] 24925428 [RefSeq]

See Genome Information for Solenopsis invicta

Pathogen Detection Resources

There are 7 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_016802725.1	≠	GCF_016802725.1	UNIL_Sinv_3.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	378,101,515
Total ungapped length	374,244,835
Gaps between scaffolds	0
Number of scaffolds	219
Scaffold N50	26,227,205
Scaffold L50	7
Number of contigs	317
Contig N50	9,421,447
Contig L50	13
Total number of chromosomes and plasmids	16
Number of component sequences (WGS or clone)	219

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM028732.1	=	NC_052664.1	0
Chromosome 2	CM028733.1	=	NC_052665.1	0
Chromosome 3	CM028734.1	=	NC_052666.1	0
Chromosome 4	CM028735.1	=	NC_052667.1	0
Chromosome 5	CM028736.1	=	NC_052668.1	0
Chromosome 6	CM028737.1	=	NC_052669.1	0
Chromosome 7	CM028738.1	=	NC_052670.1	0
Chromosome 8	CM028739.1	=	NC_052671.1	0
Chromosome 9	CM028740.1	=	NC_052672.1	0
Chromosome 10	CM028741.1	=	NC_052673.1	0
Chromosome 11	CM028742.1	=	NC_052674.1	0
Chromosome 12	CM028743.1	=	NC_052675.1	0
Chromosome 13	CM028744.1	=	NC_052676.1	0
Chromosome 14	CM028745.1	=	NC_052677.1	0
Chromosome 15	CM028746.1	=	NC_052678.1	0
Chromosome 16	CM028747.1	=	NC_052679.1	0
unplaced	n/a	n/a	n/a	203

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	378,101,515	219	374,244,835	26,227,205	98
Chromosome 1	33,177,226	1	33,098,591	33,177,226	4
Chromosome 2	26,469,689	1	26,469,689	26,469,689	0
Chromosome 3	32,991,433	1	32,991,107	32,991,433	5
Chromosome 4	29,136,123	1	29,136,023	29,136,123	1
Chromosome 5	28,503,674	1	28,503,674	28,503,674	0
Chromosome 6	26,405,556	1	26,271,609	26,405,556	2
Chromosome 7	19,206,699	1	18,970,945	19,206,699	3
Chromosome 8	25,780,517	1	25,025,143	25,780,517	5
Chromosome 9	17,670,060	1	17,523,932	17,670,060	5
Chromosome 10	19,544,602	1	19,544,489	19,544,602	2
Chromosome 11	18,129,727	1	18,069,030	18,129,727	2
Chromosome 12	21,132,138	1	20,526,818	21,132,138	6
Chromosome 13	15,963,722	1	15,557,188	15,963,722	6
Chromosome 14	19,316,052	1	18,200,765	19,316,052	7
Chromosome 15	11,281,375	1	10,970,820	11,281,375	2
Chromosome 16	26,227,205	1	26,223,295	26,227,205	40
unplaced	7,165,717	203	7,161,717	66,962	8

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UNIL_Sinv_3.0

See Genome Information for Solenopsis invicta

Pathogen Detection Resources

There are 7 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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